RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 C11orf65Q8NCR3 313 aa23.27■■□□□ 1.32
TRIM28-204ENST00000594806 HIPK4Q8NE63 616 aa23.27■■□□□ 1.32
TRIM28-204ENST00000594806 NFKBIDQ8NI38 313 aa23.27■■□□□ 1.32
TRIM28-204ENST00000594806 ITLN2Q8WWU7 325 aaPredicted RBP23.27■■□□□ 1.32
TRIM28-204ENST00000594806 CCT8L2Q96SF2 557 aa23.27■■□□□ 1.32
TRIM28-204ENST00000594806 COQ3Q9NZJ6 369 aa23.27■■□□□ 1.32
TRIM28-204ENST00000594806 AP3M1Q9Y2T2 418 aa23.27■■□□□ 1.32
TRIM28-204ENST00000594806 FXYD1O00168 92 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 GLI4P10075 376 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 UQCRBP14927 111 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 PRKCAP17252 672 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 PMPCAQ10713 525 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 CAPRIN1Q14444 709 aaKnown RBP23.26■■□□□ 1.31
TRIM28-204ENST00000594806 QPRTQ15274 297 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 ADRM1Q16186 407 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 CYP51A1Q16850 503 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 MRPL2Q5T653 305 aaKnown RBP23.26■■□□□ 1.31
TRIM28-204ENST00000594806 MARVELD2Q8N4S9 558 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 ANKS4BQ8N8V4 417 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 ASB5Q8WWX0 329 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 RNF145Q96MT1 663 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 EFCAB1Q9HAE3 211 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 ADAM21Q9UKJ8 722 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 ANGPT4Q9Y264 503 aa23.26■■□□□ 1.31
TRIM28-204ENST00000594806 CDHR4A6H8M9 788 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 H3BML4 177 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 FAAHO00519 579 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 SHOX2O60902 331 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-204ENST00000594806 DCTN3O75935 186 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 NTN1O95631 604 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 FAM107AO95990 144 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 PABPC4LP0CB38 370 aaKnown RBP23.25■■□□□ 1.31
TRIM28-204ENST00000594806 ME2P23368 584 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 TIMP3P35625 211 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 DLX5P56178 289 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 NUP107P57740 925 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 RPS3AP61247 264 aaKnown RBP23.25■■□□□ 1.31
TRIM28-204ENST00000594806 SRYQ05066 204 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 RPS26P11Q5JNZ5 115 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-204ENST00000594806 RIPPLY2Q5TAB7 128 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 CHMP1BQ7LBR1 199 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 ARPINQ7Z6K5 226 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 ADGRE4PQ86SQ3 457 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 POU5F2Q8N7G0 328 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 BHLHE22Q8NFJ8 381 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-204ENST00000594806 OR5M1Q8NGP8 315 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 POC1BQ8TC44 478 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 SLC35B4Q969S0 331 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 PSMG3-AS1Q96PY0 264 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 ZNF607Q96SK3 696 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 ECSITQ9BQ95 431 aa23.25■■□□□ 1.31
TRIM28-204ENST00000594806 DNAJB12Q9NXW2 375 aaKnown RBP23.25■■□□□ 1.31
TRIM28-204ENST00000594806 ZNF443Q9Y2A4 671 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-204ENST00000594806 CLDN24A6NM45 220 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 SERPINB7O75635 380 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 RNF224P0DH78 156 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 EEF1A1P68104 462 aaKnown RBP23.24■■□□□ 1.31
TRIM28-204ENST00000594806 FOXF1Q12946 379 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 SELPLGQ14242 412 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 TOMM34Q15785 309 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-204ENST00000594806 ZNF311Q5JNZ3 666 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 GKAP1Q5VSY0 366 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-204ENST00000594806 ZNF836Q6ZNA1 936 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 HMGN2P46Q86SG4 172 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 VRK2Q86Y07 508 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 PTOV1Q86YD1 416 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 TREML1Q86YW5 311 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 OR10A6Q8NH74 314 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 FBXO27Q8NI29 283 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 CNOT9Q92600 299 aaKnown RBP23.24■■□□□ 1.31
TRIM28-204ENST00000594806 RCN3Q96D15 328 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 LRRC37BQ96QE4 947 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 KLHDC3Q9BQ90 382 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 TUBA1CQ9BQE3 449 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 ACER3Q9NUN7 267 aa23.24■■□□□ 1.31
TRIM28-204ENST00000594806 PAQR5Q9NXK6 330 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-204ENST00000594806 PRORSD1PA6NEY8 169 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 GJE1A6NN92 205 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 PRKAR1BP31321 381 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 HACD2Q6Y1H2 254 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 ZNF550Q7Z398 422 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 RPRMLQ8N4K4 120 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 ZNF563Q8TA94 476 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 TRIB1Q96RU8 372 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 HOPXQ9BPY8 73 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-204ENST00000594806 SLC39A3Q9BRY0 314 aa23.23■■□□□ 1.31
TRIM28-204ENST00000594806 MBD3L4A6NDZ8 208 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-204ENST00000594806 MBD3L3A6NE82 208 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-204ENST00000594806 CFAP73A6NFT4 308 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 MBD3L5A6NJ08 208 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-204ENST00000594806 HSPB2A8KAH6 182 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 SHISA8B8ZZ34 492 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 BCAS1O75363 584 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-204ENST00000594806 FKBP2P26885 142 aaKnown RBP23.22■■□□□ 1.31
TRIM28-204ENST00000594806 CHRNB4P30926 498 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 GZMMP51124 257 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 SESN3P58005 492 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 PLAURQ03405 335 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 SELENBP1Q13228 472 aa23.22■■□□□ 1.31
TRIM28-204ENST00000594806 ART3Q13508 389 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms