RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 IL7RP16871 459 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 GPX2P18283 190 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 PGCP20142 388 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 IL11P20809 199 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 ME2P23368 584 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 RPS3AP61247 264 aaKnown RBP13.11□□□□□ -0.31
VRK3-206ENST00000594090 NFYCQ13952 458 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 CTU2Q2VPK5 515 aaKnown RBP13.11□□□□□ -0.31
VRK3-206ENST00000594090 RUNDC3AQ59EK9 446 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 SLC25A53Q5H9E4 307 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 GCNT6Q5T4J0 391 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 MRPL2Q5T653 305 aaKnown RBP13.11□□□□□ -0.31
VRK3-206ENST00000594090 CHMP1BQ7LBR1 199 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 OR52P1PQ8NH57 321 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 FBXO27Q8NI29 283 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 ST8SIA1Q92185 356 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 CNOT9Q92600 299 aaKnown RBP13.11□□□□□ -0.31
VRK3-206ENST00000594090 CGREF1Q99674 301 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 PINK1Q9BXM7 581 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 TMEM185BQ9H7F4 350 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 CHST11Q9NPF2 352 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 KCNJ16Q9NPI9 418 aa13.11□□□□□ -0.31
VRK3-206ENST00000594090 SPTAN1Q13813 2472 aaKnown RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 HEATR5AQ86XA9 2040 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 CACNA1CQ13936 2221 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 A0A0G2JPF8 293 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 HNRNPCL2B2RXH8 293 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 HNRNPCL3B7ZW38 293 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 EIF1AYO14602 144 aaKnown RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 DVL2O14641 736 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 HNRNPCL1O60812 293 aaKnown RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 TGM6O95932 706 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 HNRNPCL4P0DMR1 293 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 SHC1P29353 583 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 ADSLP30566 484 aaPredicted RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 LSP1P33241 339 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 SEC24CP53992 1094 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 SESN3P58005 492 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 TFF3Q07654 80 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 MAPRE2Q15555 327 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 SLC25A35Q3KQZ1 300 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 LIN52Q52LA3 116 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 PRAMEF8Q5VWM4 474 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 PRAMEF7Q5VXH5 474 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 ZNF787Q6DD87 383 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 POMZP3Q6PJE2 187 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 ZNF836Q6ZNA1 936 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 VRK2Q86Y07 508 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 RELL2Q8NC24 303 aaPredicted RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 ZNF845Q96IR2 970 aaPredicted RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 KLHL15Q96M94 604 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 DOCK7Q96N67 2140 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 ZFP3Q96NJ6 502 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 ANKRD27Q96NW4 1050 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 TRIM8Q9BZR9 551 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 BCL2L10Q9HD36 194 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 DNAJB12Q9NXW2 375 aaKnown RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 ZNF629Q9UEG4 869 aaPredicted RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 ZNF443Q9Y2A4 671 aaPredicted RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 ZNF175Q9Y473 711 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 SPTBN1Q01082 2364 aaKnown RBP13.1□□□□□ -0.31
VRK3-206ENST00000594090 HECTD1Q9ULT8 2610 aa13.1□□□□□ -0.31
VRK3-206ENST00000594090 UTP20O75691 2785 aaKnown RBP13.09□□□□□ -0.31
VRK3-206ENST00000594090 SLC22A20A6NK97 555 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 BBIP1A8MTZ0 92 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 C5orf58C9J3I9 102 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 TNFSF11O14788 317 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 EFNA2O43921 213 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 ADAM11O75078 769 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 RCBTB2O95199 551 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 OPN1LWP04000 364 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 THBS1P07996 1170 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 TMIGD3P0DMS9 266 aaPredicted RBP13.09□□□□□ -0.31
VRK3-206ENST00000594090 BMP5P22003 454 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 CTSSP25774 331 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 SFTPDP35247 375 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 EIF1AXP47813 144 aaKnown RBP13.09□□□□□ -0.31
VRK3-206ENST00000594090 SLC6A8P48029 635 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 GYS2P54840 703 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 MTPNP58546 118 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 SELENBP1Q13228 472 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 PON3Q15166 354 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 TRMT5Q32P41 509 aaKnown RBP13.09□□□□□ -0.31
VRK3-206ENST00000594090 COQ5Q5HYK3 327 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 REP15Q6BDI9 236 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 SP5Q6BEB4 398 aaPredicted RBP13.09□□□□□ -0.31
VRK3-206ENST00000594090 ESPNLQ6ZVH7 1005 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 P4HA3Q7Z4N8 544 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 SPATA21Q7Z572 469 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 SNX32Q86XE0 403 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 LILRA2Q8N149 483 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 OR10D3Q8NH80 312 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 NFKBIDQ8NI38 313 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 BBS10Q8TAM1 723 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 TMEM234Q8WY98 164 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 FIG4Q92562 907 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 ADGRG7Q96K78 797 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 TMEM38AQ9H6F2 299 aa13.09□□□□□ -0.31
VRK3-206ENST00000594090 CACYBPQ9HB71 228 aaKnown RBP13.09□□□□□ -0.31
VRK3-206ENST00000594090 CAPN7Q9Y6W3 813 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms