RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TMEM234Q8WY98 164 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 ST8SIA1Q92185 356 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 WNT2BQ93097 391 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 ZFP3Q96NJ6 502 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 ANKRD27Q96NW4 1050 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 CGREF1Q99674 301 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 TM9SF2Q99805 663 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 CPPED1Q9BRF8 314 aaPredicted RBP10.73□□□□□ -0.69
LIG3-213ENST00000590630 THUMPD3Q9BV44 507 aaKnown RBP10.73□□□□□ -0.69
LIG3-213ENST00000590630 CACYBPQ9HB71 228 aaKnown RBP10.73□□□□□ -0.69
LIG3-213ENST00000590630 BCL2L10Q9HD36 194 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 CHST11Q9NPF2 352 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 PAQR5Q9NXK6 330 aaPredicted RBP10.73□□□□□ -0.69
LIG3-213ENST00000590630 CLCF1Q9UBD9 225 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 Q9UFV3 132 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 CAPN7Q9Y6W3 813 aa10.73□□□□□ -0.69
LIG3-213ENST00000590630 ITPR2Q14571 2701 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 NBPF19A0A087WUL8 3843 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 GMNCA6NCL1 334 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 CLDN24A6NM45 220 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 GJE1A6NN92 205 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 KDM4EB2RXH2 506 aaPredicted RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 C5orf58C9J3I9 102 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 FBP2O00757 339 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 SEC14L5O43304 696 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 CCDC22O60826 627 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 TOXO94900 526 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 NTN1O95631 604 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 NPPAP01160 153 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 THBS1P07996 1170 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 NUDT7P0C024 238 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 ARAFP10398 606 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 SUCLG1P53597 346 aaKnown RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 SEC24CP53992 1094 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 CLDN15P56746 228 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 CLDN20P56880 219 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 RPS3AP61247 264 aaKnown RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 LARS2Q15031 903 aaKnown RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 TOMM34Q15785 309 aaPredicted RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 ZSWIM7Q19AV6 140 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 TRMT5Q32P41 509 aaKnown RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 MMEL1Q495T6 779 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 LIN52Q52LA3 116 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 MRPL2Q5T653 305 aaKnown RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 RNF220Q5VTB9 566 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 REEP3Q6NUK4 255 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 ESPNLQ6ZVH7 1005 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 CPLX4Q7Z7G2 160 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 HMGN2P46Q86SG4 172 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 GGNQ86UU5 652 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 GRAMD2AQ8IUY3 354 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 TNIP2Q8NFZ5 429 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 OR52P1PQ8NH57 321 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 FBXO27Q8NI29 283 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 BBS10Q8TAM1 723 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 POC1BQ8TC44 478 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 SMPDL3BQ92485 455 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 MAL2Q969L2 176 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 NPAS1Q99742 590 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 ELAC2Q9BQ52 826 aaKnown RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 IKZF5Q9H5V7 419 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 TMEM38AQ9H6F2 299 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 ARMC7Q9H6L4 198 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 DNAJB12Q9NXW2 375 aaKnown RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 ZNF629Q9UEG4 869 aaPredicted RBP10.72□□□□□ -0.69
LIG3-213ENST00000590630 PRDM4Q9UKN5 801 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 ZNF232Q9UNY5 417 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 IFT52Q9Y366 437 aa10.72□□□□□ -0.69
LIG3-213ENST00000590630 TACC2O95359 2948 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 CDHR4A6H8M9 788 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 SLC22A20A6NK97 555 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 H0YC42 278 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 EIF1AYO14602 144 aaKnown RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 DVL2O14641 736 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 ADAMDEC1O15204 470 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 BCAS1O75363 584 aaPredicted RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 MPDZO75970 2070 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 RCBTB2O95199 551 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 PGM3O95394 542 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 UQCRBP14927 111 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 ETS2P15036 469 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 SLC6A2P23975 617 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 GYS2P54840 703 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 TPD52P55327 224 aaPredicted RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 DLX5P56178 289 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 MTPNP58546 118 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 GNGT1P63211 74 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 CDK6Q00534 326 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 PLAURQ03405 335 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 SELENBP1Q13228 472 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 CYLC2Q14093 348 aaPredicted RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 SLC25A35Q3KQZ1 300 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 RPS26P11Q5JNZ5 115 aaPredicted RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 SNX32Q86XE0 403 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 KRT73Q86Y46 540 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 ANKHD1Q8IWZ3 2542 aaKnown RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 ZNF440Q8IYI8 595 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 LILRA2Q8N149 483 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 C10orf111Q8N326 155 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms