RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ST3GAL3Q11203 375 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 KIAA0040Q15053 153 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 EXOC3L2Q2M3D2 409 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 CCDC152Q4G0S7 254 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 BEND3Q5T5X7 828 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 ATF7IP2Q5U623 682 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 CASC1Q6TDU7 716 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 Q6ZPB1 254 aaPredicted RBP2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 DNM1P46Q6ZS02 220 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 RGS9BPQ6ZS82 235 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 MOB1BQ7L9L4 216 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 TPRA1Q86W33 373 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 ZBED8Q8IZ13 594 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 CD177Q8N6Q3 437 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 TCTEX1D2Q8WW35 142 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 MCHR1Q99705 422 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 SLC35A5Q9BS91 424 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 TEX13BQ9BXU2 312 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 DEFB126Q9BYW3 111 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 NAT10Q9H0A0 1025 aaKnown RBP2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 IKZF5Q9H5V7 419 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 UFSP2Q9NUQ7 469 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 VNN3Q9NY84 501 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 OR1A1Q9P1Q5 309 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 DCDC2Q9UHG0 476 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 RIMS3Q9UJD0 308 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 PPIAL4AQ9Y536 164 aa2.77□□□□□ -1.97
SMCHD1-209ENST00000583441 ANKRD30BQ9BXX2 1392 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 IGHV7-81A0A0B4J1V7 117 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 FAM168BA1KXE4 195 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 FRG2CA6NGY1 282 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 PCP4L1A6NKN8 68 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 G3V4G9 280 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CDX4O14627 284 aaPredicted RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 TNFSF11O14788 317 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 PHOX2AO14813 284 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 LATO43561 262 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 TBL1XO60907 577 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 MTX2O75431 263 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 LYPLA1O75608 230 aaPredicted RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 LALBAP00709 142 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 DNAH10OSP0CZ25 163 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CYP2B6P20813 491 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 UQCRC2P22695 453 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 NTSP30990 170 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 TDO2P48775 406 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 MAP2K1Q02750 393 aaPredicted RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CHRNB3Q05901 458 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 NCBP1Q09161 790 aaKnown RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 IL24Q13007 206 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CHIT1Q13231 466 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 MXD4Q14582 209 aaPredicted RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 TIGITQ495A1 244 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 OR2B11Q5JQS5 317 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 FAM43BQ6ZT52 329 aaPredicted RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 FRA10AC1Q70Z53 315 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CCDC80Q76M96 950 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 NLRP9Q7RTR0 991 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 PPP1R27Q86WC6 154 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 SKA3Q8IX90 412 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CLEC4FQ8N1N0 589 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 LINC01561Q8N1V8 128 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 LINC00612Q8N6U2 182 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 OR9A1PQ8NGU1 263 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 OR2T3Q8NH03 318 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 ARNTL2Q8WYA1 636 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 FAM122AQ96E09 287 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 AMDHD1Q96NU7 426 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 TGM7Q96PF1 710 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CCT7Q99832 543 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 NIPSNAP3BQ9BS92 247 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 ISG20L2Q9H9L3 353 aaKnown RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 APMAPQ9HDC9 416 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 XPO7Q9UIA9 1087 aaKnown RBP2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 SCML2Q9UQR0 700 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 VSIG4Q9Y279 399 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 CA5BQ9Y2D0 317 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 PLLPQ9Y342 182 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 PTCH1Q13635 1447 aa2.76□□□□□ -1.97
SMCHD1-209ENST00000583441 SYNJ2BP-COX16A0A087WUM0 186 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 F5H6K3 240 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 SULT2B1O00204 365 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 ARPC3O15145 178 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 HCN1O60741 890 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 ECI2O75521 394 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 CA1P00915 261 aaPredicted RBP2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 PNMTP11086 282 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 RNH1P13489 461 aaKnown RBP2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 HNF1AP20823 631 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 IMPDH1P20839 514 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 EPHX2P34913 555 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 GRIA1P42261 906 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 SSR1P43307 286 aaKnown RBP2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 STARP49675 285 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 ARFIP1P53367 373 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 LIM2P55344 173 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 ACTR1AP61163 376 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 KLRC3Q07444 240 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 LRRC36Q1X8D7 754 aa2.75□□□□□ -1.97
SMCHD1-209ENST00000583441 GGTA1PQ4G0N0 100 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms