RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 TOR3AQ9H497 397 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 RIBC2Q9H4K1 309 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 KRCC1Q9NPI7 259 aaPredicted RBP9.33□□□□□ -0.92
SS18-210ENST00000578700 NECTIN3Q9NQS3 549 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 LANCL2Q9NS86 450 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 STMN3Q9NZ72 180 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 ABI3Q9P2A4 366 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 MKLN1Q9UL63 735 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 ERVK-19Q9WJR5 959 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 ZNF443Q9Y2A4 671 aaPredicted RBP9.33□□□□□ -0.92
SS18-210ENST00000578700 MYRFQ9Y2G1 1151 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 POFUT2Q9Y2G5 429 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 LYVE1Q9Y5Y7 322 aa9.33□□□□□ -0.92
SS18-210ENST00000578700 ZNF469Q96JG9 3925 aaPredicted RBP9.33□□□□□ -0.92
SS18-210ENST00000578700 ANKHD1Q8IWZ3 2542 aaKnown RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 PRAMEF27A3QJZ7 478 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 ARRDC5A6NEK1 342 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 AGAP5A6NIR3 686 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 TMEM229AB2RXF0 380 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 FAAHO00519 579 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 ZNHIT1O43257 154 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 SLC19A2O60779 497 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 CLDN14O95500 239 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 SERPINA7P05543 415 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 ITGAMP11215 1152 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 COX6A1P12074 109 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 TRHRP34981 398 aaPredicted RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 KRT20P35900 424 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 RFX3P48380 749 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 GTF2A1P52655 376 aaPredicted RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 HMGA2P52926 109 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 TAS2R41P59536 307 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 DCAF7P61962 342 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 FUT7Q11130 342 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 INAQ16352 499 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 DECR1Q16698 335 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 EXOC3L2Q2M3D2 409 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.32□□□□□ -0.92
SS18-210ENST00000578700 ABHD17BQ5VST6 288 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 KDM4DQ6B0I6 523 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 TYW3Q6IPR3 259 aaKnown RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 FRRS1Q6ZNA5 592 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 RRM2BQ7LG56 351 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 TMEM179BQ7Z7N9 219 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 OFCC1Q8IZS5 231 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 HS3ST5Q8IZT8 346 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 ZNF786Q8N393 782 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 GPR32P1Q8NGA4 272 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 DOK4Q8TEW6 326 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 PIK3R3Q92569 461 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 SENP5Q96HI0 755 aaPredicted RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 FBXL20Q96IG2 436 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 PRRC1Q96M27 445 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 YTHDF1Q9BYJ9 559 aaKnown RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 POLR2J2Q9GZM3 115 aaKnown RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 TGIF2Q9GZN2 237 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 ZNF350Q9GZX5 532 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 HOXD1Q9GZZ0 328 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 POLR2J3Q9H1A7 115 aaKnown RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 TSPAN10Q9H1Z9 355 aaPredicted RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 NMNAT1Q9HAN9 279 aaPredicted RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 PAPOLBQ9NRJ5 636 aaKnown RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 FAM118AQ9NWS6 357 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 VNN3Q9NY84 501 aa9.32□□□□□ -0.92
SS18-210ENST00000578700 C19orf25Q9UFG5 118 aaPredicted RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 MAGED1Q9Y5V3 778 aaPredicted RBP9.32□□□□□ -0.92
SS18-210ENST00000578700 SCN2AQ99250 2005 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 IGKV3D-11A0A0A0MRZ8 115 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 LOC100130705A0A1B0GUX0 176 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 TCRBV16S1A1N1A0A5B0 115 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 OR6C76A6NM76 312 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 A8MUA0 341 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 IDSB3KWA1 339 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 TGFBR3LH3BV60 316 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 M0R3H8 397 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 BCKDKO14874 412 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 KIAA0513O60268 411 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 FCMRO60667 390 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 SEC24DO94855 1032 aaPredicted RBP9.31□□□□□ -0.92
SS18-210ENST00000578700 CYC1P08574 325 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 NID1P14543 1247 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 HPGDP15428 266 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 S1PR1P21453 382 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 SSTR4P31391 388 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 EMDP50402 254 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 UGT2B15P54855 530 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 ADARB1P78563 741 aaKnown RBP9.31□□□□□ -0.92
SS18-210ENST00000578700 RHAGQ02094 409 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 ST3GAL3Q11203 375 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 KEAP1Q14145 624 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 LAPTM4AQ15012 233 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 TESK1Q15569 626 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 IQCCQ4KMZ1 466 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 EXOSC6Q5RKV6 272 aaKnown RBP9.31□□□□□ -0.92
SS18-210ENST00000578700 CCNJQ5T5M9 372 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 FAHD1Q6P587 224 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 FIGNL1Q6PIW4 674 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 DGAT2L6Q6ZPD8 337 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 PLEKHM3Q6ZWE6 761 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 SLC29A4Q7RTT9 530 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms