RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SGCBQ16585 318 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 IMPG1Q17R60 797 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 EXOC3L2Q2M3D2 409 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CCDC153Q494R4 210 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 GALNTL6Q49A17 601 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 BEX5Q5H9J7 111 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS53-213ENST00000572334 CCNJQ5T5M9 372 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CPTPQ5TA50 214 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 LIPMQ5VYY2 423 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 KANK2Q63ZY3 851 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CBLN3Q6UW01 205 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ZNF704Q6ZNC4 412 aaPredicted RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 NUFIP2Q7Z417 695 aaKnown RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 ATG4DQ86TL0 474 aaPredicted RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 LSRQ86X29 649 aaPredicted RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 TDRPQ86YL5 185 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 C10orf107Q8IVU9 208 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 GABRG1Q8N1C3 465 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CDRT4Q8N9R6 151 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 OR2V1Q8NHB1 315 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CLHC1Q8NHS4 586 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 RAB3IL1Q8TBN0 382 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 GPR151Q8TDV0 419 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ACTRT2Q8TDY3 377 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 RNF128Q8TEB7 428 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ROBO4Q8WZ75 1007 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ITPKCQ96DU7 683 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CCDC126Q96EE4 140 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 FAM120BQ96EK7 910 aaKnown RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 TSSK3Q96PN8 268 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CCT7Q99832 543 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 SRXN1Q9BYN0 137 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 TBL1XR1Q9BZK7 514 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 LRMDAQ9H2I8 198 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 Q9H521 79 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 TMEM185BQ9H7F4 350 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 COQ10BQ9H8M1 238 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 LRTM1Q9HBL6 345 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 SAR1AQ9NR31 198 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ACSS1Q9NUB1 689 aaPredicted RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 FGFR1OP2Q9NVK5 253 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 C1orf109Q9NX04 203 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 GIMAP2Q9UG22 337 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 DNAJC15Q9Y5T4 150 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ACTL7BQ9Y614 415 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 KCNE3Q9Y6H6 103 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.98□□□□□ -1.45
VPS53-213ENST00000572334 NPIPA5A0A0B4J1W7 369 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ZNF814B7Z6K7 855 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 NPIPA7E9PJI5 369 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 SLC28A1O00337 649 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 HS3ST1O14792 307 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 AZIN1O14977 448 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 CNOT4O95628 575 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 HMGN2P05204 90 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 HNRNPCP07910 306 aaKnown RBP eCLIP5.98□□□□□ -1.451e-6■■□□□ 11.4
VPS53-213ENST00000572334 FGF4P08620 206 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 LINC00032P0C843 101 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 DANCRP0C864 163 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 NPIPA8P0DM63 369 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 FCGR2AP12318 317 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 BCKDHAP12694 445 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 S100A1P23297 94 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 PCSK6P29122 969 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 CLK3P49761 638 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 RNF144AP50876 292 aaPredicted RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 PRKAG1P54619 331 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 MANFP55145 182 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 NAA20P61599 178 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 NCALDP61601 193 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 RPL38P63173 70 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 ZNF117Q03924 483 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 FOXF1Q12946 379 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 MLC1Q15049 377 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 TSC22D1Q15714 1073 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ZNF239Q16600 458 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 NDUFA5Q16718 116 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 KLHL26Q53HC5 615 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 XKR7Q5GH72 579 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ZCCHC12Q6PEW1 402 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 TFAP2EQ6VUC0 442 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ESPNLQ6ZVH7 1005 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 PLEKHM3Q6ZWE6 761 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 ASRGL1Q7L266 308 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 TRABD2AQ86V40 505 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 WDR75Q8IWA0 830 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 C4orf33Q8N1A6 199 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 RIBC1Q8N443 379 aaPredicted RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 ZNF611Q8N823 705 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 OR7A2PQ8NGA2 310 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 OR6Y1Q8NGX8 325 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 CEP70Q8NHQ1 597 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 PSMA8Q8TAA3 256 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 EPS8L3Q8TE67 593 aaKnown RBP5.98□□□□□ -1.45
VPS53-213ENST00000572334 ABHD3Q8WU67 409 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 WDR60Q8WVS4 1066 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 OSTF1Q92882 214 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 NEUROG1Q92886 237 aa5.98□□□□□ -1.45
VPS53-213ENST00000572334 CDS1Q92903 461 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms