RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RHOJQ9H4E5 214 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 TMEM231Q9H6L2 316 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 SLC25A22Q9H936 323 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 EML4Q9HC35 981 aaKnown RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 TRPV5Q9NQA5 729 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 YAE1D1Q9NRH1 226 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 SPASTQ9UBP0 616 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 ABCC4O15439 1325 aa1.59□□□□□ -2.16
VPS35-207ENST00000568191 COL1A2P08123 1366 aa1.59□□□□□ -2.16
VPS35-207ENST00000568191 MTCL1Q9Y4B5 1905 aaKnown RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 LOC100131303A0A0U1RQF7 123 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 FAM170AA1A519 330 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 SLC9B1P1A6NJY1 282 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 NDUFA7O95182 113 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 PTBP3O95758 552 aaKnown RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 C6orf47O95873 294 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 TGFAP01135 160 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 PCCBP05166 539 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 CD5P06127 495 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 PNMA6AP0CW24 399 aaPredicted RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 ANXA3P12429 323 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 SERPINA2P20848 420 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 BDKRB1P46663 353 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 RABIFP47224 123 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 SLC26A5P58743 744 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 PRPS1P60891 318 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 ARF5P84085 180 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 GABPB1Q06547 395 aaPredicted RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 DNAJC21Q5F1R6 531 aaKnown RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 ATF7IP2Q5U623 682 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 KRTAP5-7Q6L8G8 165 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 LPCAT2Q7L5N7 544 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 TICAM2Q86XR7 235 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 EFCAB13Q8IY85 973 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 MTURNQ8N3F0 131 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 ARRDC1Q8N5I2 433 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 SLC22A8Q8TCC7 542 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 DQX1Q8TE96 717 aaKnown RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 FAM151AQ8WW52 585 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 SLC13A3Q8WWT9 602 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 SLC5A11Q8WWX8 675 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 SDSLQ96GA7 329 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 TESK2Q96S53 571 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 RUFY1Q96T51 708 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 FEM1AQ9BSK4 669 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 PLA2G2FQ9BZM2 168 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 COMMD4Q9H0A8 199 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 POLR3FQ9H1D9 316 aaPredicted RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 PPDPFQ9H3Y8 114 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 ACTR8Q9H981 624 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 ROPN1Q9HAT0 212 aaPredicted RBP1.58□□□□□ -2.16
VPS35-207ENST00000568191 SOHLH2Q9NX45 425 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 TBX21Q9UL17 535 aa1.58□□□□□ -2.16
VPS35-207ENST00000568191 PPIAL4EA0A075B759 164 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 PPIAL4CA0A0B4J2A2 164 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 E9PMD0 336 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 PPIAL4DF5H284 164 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 KRTAP4-16G5E9R7 235 aaPredicted RBP1.57□□□□□ -2.16
VPS35-207ENST00000568191 SGK494L7N484 410 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 ALPPP05187 535 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 CA3P07451 260 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 PPIAL4FP0DN26 164 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 ALPPL2P10696 532 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 ATP5A1P25705 553 aaKnown RBP1.57□□□□□ -2.16
VPS35-207ENST00000568191 NMT1P30419 496 aaKnown RBP1.57□□□□□ -2.16
VPS35-207ENST00000568191 ATXN3P54252 364 aaPredicted RBP1.57□□□□□ -2.16
VPS35-207ENST00000568191 CHRNB3Q05901 458 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 SLAQ13239 276 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 CUL1Q13616 776 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 PDIA5Q14554 519 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 CEBPEQ15744 281 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 LY6EQ16553 131 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 ADPRMQ3LIE5 342 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 TIGITQ495A1 244 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 UNQ9370/PRO34162Q6UXP9 181 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 MSANTD4Q8NCY6 345 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 OR56B1Q8NGI3 324 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 OR52I1Q8NGK6 324 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 NSMCE2Q96MF7 247 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 CCDC43Q96MW1 224 aaKnown RBP1.57□□□□□ -2.16
VPS35-207ENST00000568191 TMEM237Q96Q45 408 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 CYP2S1Q96SQ9 504 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 RASL11BQ9BPW5 248 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 WRAP53Q9BUR4 548 aaKnown RBP1.57□□□□□ -2.16
VPS35-207ENST00000568191 SRXN1Q9BYN0 137 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 MAGT1Q9H0U3 335 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 ANGPTL2Q9UKU9 493 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 ASF1AQ9Y294 204 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 TTC21BQ7Z4L5 1316 aa1.57□□□□□ -2.16
VPS35-207ENST00000568191 A0A096LNJ9 63 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 A0A0U1RQS6 177 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 A0A0U1RQV5 110 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 IQANK1A0A1B0GTG1 560 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 ESYT2A0FGR8 921 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 TRIM64A6NGJ6 449 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 TRIM64BA6NI03 449 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 ARHGAP42A6NI28 874 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 H3BMQ9 156 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 LGALS8O00214 317 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 SDHDO14521 159 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms