RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PRKNO60260 465 aaPredicted RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 PIAS2O75928 621 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 CDRT1O95170 752 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 IFNA16P05015 189 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 CLEC2LP0C7M8 214 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 ATP12AP54707 1039 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 MXD1Q05195 221 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 FHL1Q13642 323 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 ZNF791Q3KP31 576 aaPredicted RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 ALG10BQ5I7T1 473 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 QSOX2Q6ZRP7 698 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 OR51G2Q8NGK0 314 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 KISS1RQ969F8 398 aaPredicted RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 IFT27Q9BW83 186 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 TRIM2Q9C040 744 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 TPK1Q9H3S4 243 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 TNFRSF10DQ9UBN6 386 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 UGT2A1Q9Y4X1 527 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 IL9P15248 144 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 SEPHS1P49903 392 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 ZNF362Q5T0B9 420 aaPredicted RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 RPL13AP3Q6NVV1 102 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 KIRREL2Q6UWL6 708 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 LINC00114Q6XXX2 140 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 MEPCEQ7L2J0 689 aaKnown RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 GID4Q8IVV7 300 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 PSD4Q8NDX1 1056 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 PTP4A1Q93096 173 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 SLC25A46Q96AG3 418 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 NACC2Q96BF6 587 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 C1GALT1C1Q96EU7 318 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 ZDHHC12Q96GR4 267 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 ZNF578Q96N58 590 aaPredicted RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 LMF1Q96S06 567 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 SDHCQ99643 169 aaPredicted RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 NEURL2Q9BR09 285 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 G6PC3Q9BUM1 346 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 JAM3Q9BX67 310 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 CMC2Q9NRP2 79 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 LANCL2Q9NS86 450 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 CRNNQ9UBG3 495 aaPredicted RBP18.68■□□□□ 0.58
CLN3-230ENST00000568076 PCDHGB6Q9Y5F9 930 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 ISPDA4D126 451 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 BOLA2-SMG1P6H3BVE0 249 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 GABRA5P31644 462 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 TNFSF8P32971 234 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 ATP6V1E1P36543 226 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 RBM34P42696 430 aaKnown RBP18.67■□□□□ 0.58
CLN3-230ENST00000568076 OR1D5P58170 312 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 FABP5Q01469 135 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 CFHR1Q03591 330 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 CSTF1Q05048 431 aaKnown RBP18.67■□□□□ 0.58
CLN3-230ENST00000568076 GRM7Q14831 915 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 CRTC2Q53ET0 693 aaPredicted RBP18.67■□□□□ 0.58
CLN3-230ENST00000568076 FCRLBQ6BAA4 426 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 PTCRAQ6ISU1 281 aaPredicted RBP18.67■□□□□ 0.58
CLN3-230ENST00000568076 CD200R1LQ6Q8B3 271 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 SIX5Q8N196 739 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 KLHL36Q8N4N3 616 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 SYT14Q8NB59 555 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 SPRYD4Q8WW59 207 aaPredicted RBP18.67■□□□□ 0.58
CLN3-230ENST00000568076 DCLRE1CQ96SD1 692 aaKnown RBP18.67■□□□□ 0.58
CLN3-230ENST00000568076 OR10H1Q9Y4A9 318 aa18.67■□□□□ 0.58
CLN3-230ENST00000568076 HCN1O60741 890 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 IL1AP01583 271 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 EPHA4P54764 986 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SPANXN2Q5MJ10 180 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 PRPF38BQ5VTL8 546 aaKnown RBP18.66■□□□□ 0.58
CLN3-230ENST00000568076 CADM2Q8N3J6 435 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 ZNF321PQ8N8H1 164 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 OR52N1Q8NH53 320 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.66■□□□□ 0.58
CLN3-230ENST00000568076 TNFRSF13CQ96RJ3 184 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 TIMP4Q99727 224 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SLC30A2Q9BRI3 323 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 MCCC2Q9HCC0 563 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 CUTCQ9NTM9 273 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SPAG17Q6Q759 2223 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 MYO15AQ9UKN7 3530 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SLC30A4O14863 429 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 OR1D4P47884 311 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 ACSM1Q08AH1 577 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SERTAD2Q14140 314 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 TTLL10Q6ZVT0 673 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 ZNF550Q7Z398 422 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 OAFQ86UD1 273 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SDR16C5Q8N3Y7 309 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SLC37A3Q8NCC5 494 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 PTPMT1Q8WUK0 201 aaPredicted RBP18.66■□□□□ 0.58
CLN3-230ENST00000568076 ASB15Q8WXK1 588 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 SLC35B4Q969S0 331 aa18.66■□□□□ 0.58
CLN3-230ENST00000568076 IGHV1OR21-1A0A087WYE8 117 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 FAM86C2PA6NEL3 165 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 CCDC182A6NF36 153 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 SERINC4A6NH21 518 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 C17orf105B2RV13 164 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 GNB5O14775 395 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 PPP1R3DO95685 299 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 NOS3P29474 1203 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 GALNSP34059 522 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms