RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MEMO1Q9Y316 297 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 DOPEY1Q5JWR5 2465 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 A0A087WZY1 265 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 H3BML4 177 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 NDUFAB1O14561 156 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 NTN1O95631 604 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 ETS2P15036 469 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 SHC1P29353 583 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 PCGF2P35227 344 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 SLC7A2P52569 658 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 SUCLG1P53597 346 aaKnown RBP17.65■□□□□ 0.42
CLN3-225ENST00000566824 CLDN20P56880 219 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 ADORA2A-AS1P86434 159 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 RBBP4Q09028 425 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 VMACQ2NL98 169 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 LIN52Q52LA3 116 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 ZNF311Q5JNZ3 666 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 HACD2Q6Y1H2 254 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 CCDC120Q96HB5 630 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 SH3GL1Q99961 368 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 ECSITQ9BQ95 431 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 WFDC6Q9BQY6 131 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 PIGQQ9BRB3 760 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 SPATA9Q9BWV2 254 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 EXOSC3Q9NQT5 275 aaKnown RBP17.65■□□□□ 0.42
CLN3-225ENST00000566824 TAGLN3Q9UI15 199 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 DOPEY2Q9Y3R5 2298 aa17.65■□□□□ 0.42
CLN3-225ENST00000566824 C7orf72A4D263 438 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 AGFG2O95081 481 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 LDLRP01130 860 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 OPN1SWP03999 348 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 THBS1P07996 1170 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 CPN1P15169 458 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 ZNF708P17019 499 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 ACVR2AP27037 513 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 PSME3P61289 254 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 HOXC5Q00444 222 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 DMTNQ08495 405 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 ART3Q13508 389 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 CBFBQ13951 182 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 RNF220Q5VTB9 566 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 SEM1Q6ZVN7 128 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 CMIPQ8IY22 773 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 UBQLNLQ8IYU4 475 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 SMPDL3BQ92485 455 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 ZBTB8AQ96BR9 441 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 TUBA1CQ9BQE3 449 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 TP63Q9H3D4 680 aaPredicted RBP17.64■□□□□ 0.41
CLN3-225ENST00000566824 TMEM185BQ9H7F4 350 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 HHATLQ9HCP6 504 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 ANGPT4Q9Y264 503 aa17.64■□□□□ 0.41
CLN3-225ENST00000566824 USP9YO00507 2555 aaPredicted RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 DOCK7Q96N67 2140 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 SPTAN1Q13813 2472 aaKnown RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 SPTBN1Q01082 2364 aaKnown RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 A0A1B0GUH1 482 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 ETV2O00321 342 aaPredicted RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 ZG16O60844 167 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 MFN2O95140 757 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 PEPDP12955 493 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 ZNF17P17021 662 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 POU3F2P20265 443 aaPredicted RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 ACAA2P42765 397 aaKnown RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 CASP6P55212 293 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 SESN3P58005 492 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 LIPEQ05469 1076 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 EPS8Q12929 822 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 LARS2Q15031 903 aaKnown RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 ACSF3Q4G176 576 aaPredicted RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 SLC25A53Q5H9E4 307 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 C1orf185Q5T7R7 199 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 AAGABQ6PD74 315 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 RPTNQ6XPR3 784 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 GGNQ86UU5 652 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 FAM26EQ8N5C1 309 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 REXO5Q96IC2 774 aaKnown RBP17.63■□□□□ 0.41
CLN3-225ENST00000566824 PACSIN3Q9UKS6 424 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 IFT52Q9Y366 437 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 MED12LQ86YW9 2145 aa17.63■□□□□ 0.41
CLN3-225ENST00000566824 COL12A1Q99715 3063 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 FAM47E-STBD1D6RA91 191 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 E9PLN8 166 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 M0QX08 132 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 SEC14L5O43304 696 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 T-ENOLP0DO92 83 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 GLI4P10075 376 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 IDH2P48735 452 aaKnown RBP17.62■□□□□ 0.41
CLN3-225ENST00000566824 NUP107P57740 925 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 SLC25A3Q00325 362 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 KRT72Q14CN4 511 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 CDSNQ15517 529 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 DHRS4L2Q6PKH6 230 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 ENPP6Q6UWR7 440 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 GRAMD2AQ8IUY3 354 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 SMYD1Q8NB12 490 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 GPR32P1Q8NGA4 272 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 TAMM41Q96BW9 452 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 DTNBP1Q96EV8 351 aa17.62■□□□□ 0.41
CLN3-225ENST00000566824 HOPXQ9BPY8 73 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms