RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PABPC4LP0CB38 370 aaKnown RBP18.55■□□□□ 0.56
CLN3-219ENST00000565778 QPRTQ15274 297 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 SAXO2Q658L1 398 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 ANKRD34AQ69YU3 496 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 HEPHL1Q6MZM0 1159 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 RAB3IL1Q8TBN0 382 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 ARL8AQ96BM9 186 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 ARSGQ96EG1 525 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 NEURL3Q96EH8 262 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 MRGPRX4Q96LA9 322 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 OR52E6Q96RD3 313 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 PANX1Q96RD7 426 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 ZBTB18Q99592 522 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 ZNF350Q9GZX5 532 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 LAT2Q9GZY6 243 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 C6orf203Q9P0P8 240 aaPredicted RBP18.55■□□□□ 0.56
CLN3-219ENST00000565778 BTNL2Q9UIR0 455 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 KCNE5Q9UJ90 142 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 WDR45Q9Y484 360 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 C9JVG2 144 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 RAF1P04049 648 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 GPAT3Q53EU6 434 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 ZNF621Q6ZSS3 439 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 EIF3MQ7L2H7 374 aaKnown RBP18.54■□□□□ 0.56
CLN3-219ENST00000565778 ZNF550Q7Z398 422 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 TRIML2Q8N7C3 387 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 CPNE4Q96A23 557 aaPredicted RBP18.54■□□□□ 0.56
CLN3-219ENST00000565778 ZNF524Q96C55 264 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 ROPN1LQ96C74 230 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 TLCD1Q96CP7 247 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 ZC3HAV1LQ96H79 300 aaKnown RBP18.54■□□□□ 0.56
CLN3-219ENST00000565778 CCDC115Q96NT0 180 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 POLE3Q9NRF9 147 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 GPR45Q9Y5Y3 372 aa18.54■□□□□ 0.56
CLN3-219ENST00000565778 CCDC154A6NI56 674 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 PGRP06401 933 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 UBTFL6P0CB48 400 aaPredicted RBP18.53■□□□□ 0.56
CLN3-219ENST00000565778 IL12AP29459 219 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 SLC7A1P30825 629 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 KHKP50053 298 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 SLC25A53Q5H9E4 307 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 PAMR1Q6UXH9 720 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 BEND4Q6ZU67 534 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 STK32CQ86UX6 486 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 CXXC4Q9H2H0 198 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 C12orf49Q9H741 205 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 FANCFQ9NPI8 374 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 CELSR1Q9NYQ6 3014 aa18.53■□□□□ 0.56
CLN3-219ENST00000565778 CENPVL1A0A0U1RR11 272 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 PGCP20142 388 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 LRRC74AQ0VAA2 488 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 SELENBP1Q13228 472 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 SKP2Q13309 424 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 MAPK14Q16539 360 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 ZNF239Q16600 458 aaKnown RBP18.52■□□□□ 0.56
CLN3-219ENST00000565778 TIGD2Q4W5G0 525 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 TMEM201Q5SNT2 666 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 TYW3Q6IPR3 259 aaKnown RBP18.52■□□□□ 0.56
CLN3-219ENST00000565778 ZG16BQ96DA0 208 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 PIK3IP1Q96FE7 263 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 INPP5KQ9BT40 448 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 SRXN1Q9BYN0 137 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 SERINC1Q9NRX5 453 aa18.52■□□□□ 0.56
CLN3-219ENST00000565778 TEP1Q99973 2627 aaKnown RBP18.52■□□□□ 0.55
CLN3-219ENST00000565778 KIAA0513O60268 411 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 SLC22A3O75751 556 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 PRKD3O94806 890 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 ATE1O95260 518 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 NTN1O95631 604 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 C1QCP02747 245 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 GSNP06396 782 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 GUSBP08236 651 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 IDO1P14902 403 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 CRYGSP22914 178 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 ANXA11P50995 505 aaKnown RBP18.51■□□□□ 0.55
CLN3-219ENST00000565778 SESN3P58005 492 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 HPCAP84074 193 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 RNPS1Q15287 305 aaKnown RBP18.51■□□□□ 0.55
CLN3-219ENST00000565778 FCRLAQ7L513 359 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 RNF130Q86XS8 419 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 ZNF619Q8N2I2 560 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 GLB1L3Q8NCI6 653 aaPredicted RBP18.51■□□□□ 0.55
CLN3-219ENST00000565778 ZFP90Q8TF47 636 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 ABHD3Q8WU67 409 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 TMEM234Q8WY98 164 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 ZNF75CPQ92670 426 aaPredicted RBP18.51■□□□□ 0.55
CLN3-219ENST00000565778 MBD6Q96DN6 1003 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 SAP130Q9H0E3 1048 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 QRSL1Q9H0R6 528 aaKnown RBP18.51■□□□□ 0.55
CLN3-219ENST00000565778 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.51■□□□□ 0.55
CLN3-219ENST00000565778 SLC35A3Q9Y2D2 325 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 HIVEP1P15822 2718 aa18.51■□□□□ 0.55
CLN3-219ENST00000565778 F8P00451 2351 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 A0A1W2PNR3 127 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 A0A1W2PPR1 153 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 HMGN4O00479 90 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 IL6P05231 212 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 AGTR1P30556 359 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 CCKARP32238 428 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 RYKP34925 604 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms