RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 OR52N1Q8NH53 320 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 STT3BQ8TCJ2 826 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ZNF721Q8TF20 911 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 PTPMT1Q8WUK0 201 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 ST8SIA1Q92185 356 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 GGHQ92820 318 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 BORCS5Q969J3 196 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SGTBQ96EQ0 304 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 CCDC74BQ96LY2 380 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 OR6C1Q96RD1 312 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 GPX7Q96SL4 187 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 NUDT22Q9BRQ3 303 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 FUNDC2Q9BWH2 189 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 TSSK6Q9BXA6 273 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 OR8D2Q9GZM6 311 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 VN1R1Q9GZP7 353 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 LHPPQ9H008 270 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 IRF2BPLQ9H1B7 796 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 FGF20Q9NP95 211 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 C11orf16Q9NQ32 467 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 CMC2Q9NRP2 79 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SEMA4GQ9NTN9 838 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 HAO2Q9NYQ3 351 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ZNF226Q9NYT6 803 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 TVP23BQ9NYZ1 205 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 CCDC59Q9P031 241 aaKnown RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 SPIN1Q9Y657 262 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 KCNE3Q9Y6H6 103 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 NUP210LQ5VU65 1888 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 TP53BP1Q12888 1972 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 TNRC18O15417 2968 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 A0A1B0GWA3 101 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 A0A1W2PQ72 361 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 A0A1W2PS29 197 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 PRR23D1E9PI22 279 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 PEX12O00623 359 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ARPC3O15145 178 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 SURF4O15260 269 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 NDUFB5O43674 189 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 TLX2O43763 284 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 LRP3O75074 770 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 SEMA7AO75326 666 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ALOX12BO75342 701 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CDC123O75794 336 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 CLPXO76031 633 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ZFAND5O76080 213 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 INMTO95050 263 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 UTS2O95399 124 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ZIC2O95409 532 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 SOX14O95416 240 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 DDAH2O95865 285 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 HIST1H2ABP04908 130 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 PRR23D2P0DMB1 279 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 ADORA3P0DMS8 318 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 GAAP10253 952 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 NR2C1P13056 603 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 IFI30P13284 250 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CD36P16671 472 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 SLC5A2P31639 672 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ATP6V1E1P36543 226 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 MPLP40238 635 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 PEX19P40855 299 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 SLC1A3P43003 542 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 EMP2P54851 167 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 WNT4P56705 351 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ACTA2P62736 377 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ACTG2P63267 376 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CCL7P80098 99 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 EFNB1P98172 346 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 FOXK2Q01167 660 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 MC2RQ01718 297 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ZFP36L1Q07352 338 aaKnown RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 DMWDQ09019 674 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 C17orf67Q0P5P2 114 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 MOGQ16653 247 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.92□□□□□ -1.3
VPS39-204ENST00000561818 ZNF829Q3KNS6 432 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 SYT14P1Q58G82 188 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CCNJQ5T5M9 372 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 PHF19Q5T6S3 580 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 TMEM164Q5U3C3 297 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 FAM205BPQ63HN1 556 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 GPR139Q6DWJ6 353 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 LAIR2Q6ISS4 152 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 TMEM81Q6P7N7 255 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 DBX2Q6ZNG2 339 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 HIST3H2AQ7L7L0 130 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 RBM45Q8IUH3 476 aaKnown RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 CCDC71Q8IV32 467 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 SFTPA2Q8IWL1 248 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 EID2Q8N6I1 236 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 TCEANCQ8N8B7 351 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ANKK1Q8NFD2 765 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 OR5W2Q8NH69 310 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 RNF217Q8TC41 542 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 AP3S1Q92572 193 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 HIST1H2ACQ93077 130 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ADIPOR1Q96A54 375 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 YIPF6Q96EC8 236 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ARSGQ96EG1 525 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms