RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 RBBP4Q09028 425 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 VMACQ2NL98 169 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 C1orf185Q5T7R7 199 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 RTL6Q6ICC9 239 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 RPTNQ6XPR3 784 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 LSRQ86X29 649 aaPredicted RBP12.95□□□□□ -0.34
USP3-205ENST00000557884 PM20D2Q8IYS1 436 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 FITM2Q8N6M3 262 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 CCDC120Q96HB5 630 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 SPATA9Q9BWV2 254 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 RSPO3Q9BXY4 272 aaPredicted RBP12.95□□□□□ -0.34
USP3-205ENST00000557884 PRDM14Q9GZV8 571 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 EXOSC3Q9NQT5 275 aaKnown RBP12.95□□□□□ -0.34
USP3-205ENST00000557884 TAGLN3Q9UI15 199 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 IFT52Q9Y366 437 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 CHST2Q9Y4C5 530 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 FAM215AQ9Y5M1 114 aa12.95□□□□□ -0.34
USP3-205ENST00000557884 GPC6Q9Y625 555 aaPredicted RBP12.95□□□□□ -0.34
USP3-205ENST00000557884 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 C7orf72A4D263 438 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 CLEC18AA5D8T8 446 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 CFAP73A6NFT4 308 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 E9PLN8 166 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ZG16O60844 167 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 WDR1O75083 606 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 OPN1SWP03999 348 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 PRKCAP17252 672 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 IL11P20809 199 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 PSMA4P25789 261 aaKnown RBP12.94□□□□□ -0.34
USP3-205ENST00000557884 PER3P56645 1201 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 SESN3P58005 492 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 PSME3P61289 254 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 PMPCAQ10713 525 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ACSF3Q4G176 576 aaPredicted RBP12.94□□□□□ -0.34
USP3-205ENST00000557884 GLIPR1L2Q4G1C9 344 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 RNF220Q5VTB9 566 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 FAM91A1Q658Y4 838 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 POMZP3Q6PJE2 187 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 PLXDC2Q6UX71 529 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 CLEC18BQ6UXF7 455 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 HACD2Q6Y1H2 254 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 B3GNT6Q6ZMB0 384 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ARPINQ7Z6K5 226 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 COMTD1Q86VU5 262 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ARMC8Q8IUR7 673 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 SLC15A3Q8IY34 581 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 MARVELD2Q8N4S9 558 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 SMYD1Q8NB12 490 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 CLEC18CQ8NCF0 446 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ATP6V1C2Q8NEY4 427 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ZNF563Q8TA94 476 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 REXO5Q96IC2 774 aaKnown RBP12.94□□□□□ -0.34
USP3-205ENST00000557884 ZNF583Q96ND8 569 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 DMRTA2Q96SC8 542 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ZNF607Q96SK3 696 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 HOPXQ9BPY8 73 aaPredicted RBP12.94□□□□□ -0.34
USP3-205ENST00000557884 VKORC1Q9BQB6 163 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 TUBA1CQ9BQE3 449 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 SPATA5L1Q9BVQ7 753 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 AP4B1Q9Y6B7 739 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 ZGRF1Q86YA3 2104 aa12.94□□□□□ -0.34
USP3-205ENST00000557884 AHRRA9YTQ3 701 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 FAM220BPB1ANY3 271 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 LINC01387J3KSC0 135 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 NME4O00746 187 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 TPST1O60507 370 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 DNAJA2O60884 412 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 GCM2O75603 506 aaPredicted RBP12.93□□□□□ -0.34
USP3-205ENST00000557884 LDLRP01130 860 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 GLI4P10075 376 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 GP1BBP13224 206 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 PRG2P13727 222 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 GABRA1P14867 456 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 CPN1P15169 458 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 ZNF708P17019 499 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 SHC1P29353 583 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 PRKAR1BP31321 381 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 SFTPDP35247 375 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 EIF1P41567 113 aaKnown RBP12.93□□□□□ -0.34
USP3-205ENST00000557884 SLC6A8P48029 635 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 IDH2P48735 452 aaKnown RBP12.93□□□□□ -0.34
USP3-205ENST00000557884 SUCLG1P53597 346 aaKnown RBP12.93□□□□□ -0.34
USP3-205ENST00000557884 CLDN15P56746 228 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 PCBP3P57721 371 aaKnown RBP12.93□□□□□ -0.34
USP3-205ENST00000557884 NUP107P57740 925 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 ADORA2A-AS1P86434 159 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 HOXC5Q00444 222 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 LIPEQ05469 1076 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 DMTNQ08495 405 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 MERTKQ12866 999 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 EPS8Q12929 822 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 KRT72Q14CN4 511 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 C8orf82Q6P1X6 216 aaPredicted RBP12.93□□□□□ -0.34
USP3-205ENST00000557884 EID3Q8N140 333 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 MEIOBQ8N635 442 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 OR2T12Q8NG77 320 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 SSC4DQ8WTU2 575 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 ST8SIA1Q92185 356 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 TRIB1Q96RU8 372 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 ARMC7Q9H6L4 198 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms