RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	TMCO5A	Q8N6Q1	288 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	GATS	Q8NAP1	163 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	POGLUT1	Q8NBL1	392 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	ZNF540	Q8NDQ6	660 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	PRSS33	Q8NF86	280 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	MESP1	Q9BRJ9	268 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	ZNF426	Q9BUY5	554 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	DEFB126	Q9BYW3	111 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	TOR4A	Q9NXH8	423 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	CARD8	Q9Y2G2	431 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	VCAN	P13611	3396 aa		11.44	□□□□□ -0.58
SHMT2-233	ENST00000557529	IGHV1-45	A0A0A0MS14	117 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	TEX51	A0A1B0GUA7	166 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529		A0A1W2PQ72	361 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	RGS10	O43665	173 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	FADS1	O60427	444 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	NTN1	O95631	604 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	IGFBP1	P08833	259 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	PNMT	P11086	282 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	JUNB	P17275	347 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	GPR4	P46093	362 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	CCR4	P51679	360 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC35A2	P78381	396 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	BTBD16	Q32M84	506 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	TMEM201	Q5SNT2	666 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	HES3	Q5TGS1	186 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	STPG1	Q5TH74	334 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	DHRS13	Q6UX07	377 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	ZNF620	Q6ZNG0	422 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	NUP54	Q7Z3B4	507 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	GPR141	Q7Z602	305 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	MRGPRE	Q86SM8	312 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	CCDC103	Q8IW40	242 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	SPART	Q8N0X7	666 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	SVOP	Q8N4V2	548 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC15A4	Q8N697	577 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	M1AP	Q8TC57	530 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC22A8	Q8TCC7	542 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	BRIX1	Q8TDN6	353 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	ELP5	Q8TE02	316 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	TTC9	Q92623	222 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	MYDGF	Q969H8	173 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	TMCO6	Q96DC7	493 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	BPIFA2	Q96DR5	249 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC38A2	Q96QD8	506 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	TUBA1C	Q9BQE3	449 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	POLDIP3	Q9BY77	421 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC19A3	Q9BZV2	496 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	FAM117A	Q9C073	453 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	EGLN3	Q9H6Z9	239 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	C12orf10	Q9HB07	376 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	ZBTB20	Q9HC78	741 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	RYDEN	Q9NUL5	291 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	TBC1D23	Q9NUY8	699 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	IL20	Q9NYY1	176 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529	AASS	Q9UDR5	926 aa		11.43	□□□□□ -0.58
SHMT2-233	ENST00000557529		A0A087WUJ7	227 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	TMEM200C	A6NKL6	621 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	EFCAB9	A8MZ26	197 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	WWP2	O00308	870 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	OIP5	O43482	229 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	HCRTR2	O43614	444 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	HCN1	O60741	890 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	RCBTB2	O95199	551 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	NADK	O95544	446 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	HTR1A	P08908	422 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	COX6A1	P12074	109 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	MAK	P20794	623 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	TGM1	P22735	817 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	EVI2B	P34910	448 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	NBL1	P41271	181 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PCYT1A	P49585	367 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	MVK	Q03426	396 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	ZNF117	Q03924	483 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	OCLN	Q16625	522 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	SMN1	Q16637	294 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	ZBED5	Q49AG3	693 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC25A30	Q5SVS4	291 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	MEDAG	Q5VYS4	303 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	FOXB2	Q5VYV0	432 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PLAG1	Q6DJT9	500 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PRSS48	Q7RTY5	328 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	MARCH3	Q86UD3	253 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	MEX3D	Q86XN8	651 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC43A2	Q8N370	569 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	ESX1	Q8N693	406 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	IQCF1	Q8N6M8	205 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	OR52L1	Q8NGH7	329 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PFN4	Q8NHR9	129 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	HGD	Q93099	445 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	C3orf49	Q96BT1	292 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	DGCR14	Q96DF8	476 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	IMMP1L	Q96LU5	166 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	TSSK6	Q9BXA6	273 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PLA2G12A	Q9BZM1	189 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	SPRY4	Q9C004	299 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	B3GNT4	Q9C0J1	378 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	CCDC90B	Q9GZT6	254 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	DSN1	Q9H410	356 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	LIN28A	Q9H9Z2	209 aa	Known RBP	11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms