RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 AGPAT4Q9NRZ5 378 aa11.11□□□□□ -0.63
SHMT2-209ENST00000553949 SLC7A8Q9UHI5 535 aa11.11□□□□□ -0.63
SHMT2-209ENST00000553949 RPS6KA6Q9UK32 745 aa11.11□□□□□ -0.63
SHMT2-209ENST00000553949 SAMD4AQ9UPU9 718 aaKnown RBP11.11□□□□□ -0.63
SHMT2-209ENST00000553949 VDAC3Q9Y277 283 aa11.11□□□□□ -0.63
SHMT2-209ENST00000553949 MRPS18CQ9Y3D5 142 aaKnown RBP11.11□□□□□ -0.63
SHMT2-209ENST00000553949 IGSF10Q6WRI0 2623 aa11.11□□□□□ -0.63
SHMT2-209ENST00000553949 FAAHO00519 579 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 WISP2O76076 250 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 STAMBPO95630 424 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 PRB1P04280 392 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 ACAA2P42765 397 aaKnown RBP11.1□□□□□ -0.63
SHMT2-209ENST00000553949 IDH2P48735 452 aaKnown RBP11.1□□□□□ -0.63
SHMT2-209ENST00000553949 ZNF136P52737 540 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 RGS8P57771 180 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-209ENST00000553949 HOXC5Q00444 222 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 NRF1Q16656 503 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 GLYR1Q49A26 553 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-209ENST00000553949 WIPI1Q5MNZ9 446 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-209ENST00000553949 VTCN1Q7Z7D3 282 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 LACC1Q8IV20 430 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 OR4D11Q8NGI4 311 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 ZNF563Q8TA94 476 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 VANGL1Q8TAA9 524 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-209ENST00000553949 CPT1CQ8TCG5 803 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 ZBTB8AQ96BR9 441 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 HSH2DQ96JZ2 352 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 GPR137Q96N19 417 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 SLX1AQ9BQ83 275 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 SLC6A15Q9H2J7 730 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 POMPQ9Y244 141 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 SLC9A8Q9Y2E8 581 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 RPH3AQ9Y2J0 694 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-209ENST00000553949 SH3GLB1Q9Y371 365 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 LIPGQ9Y5X9 500 aa11.1□□□□□ -0.63
SHMT2-209ENST00000553949 SPTA1P02549 2419 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 ZFYVE26Q68DK2 2539 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 SMG1Q96Q15 3661 aaKnown RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TRGV5A0A0B4J1U4 118 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 C7orf72A4D263 438 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 SHISA8B8ZZ34 492 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 ETV2O00321 342 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 HCN1O60741 890 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 PRKD3O94806 890 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 IGHG3P01860 377 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 PRKCAP17252 672 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TNFRSF1BP20333 461 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 EIF1P41567 113 aaKnown RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 OR1E2P47887 323 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TDGF1P3P51864 188 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 SESN3P58005 492 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 B3GALT5-AS1P59052 145 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 COPZ1P61923 177 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 FOXK1P85037 733 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 FOXF1Q12946 379 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 NPTX1Q15818 432 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TMEM44Q2T9K0 475 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 IFI44LQ53G44 452 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 KRTCAP3Q53RY4 240 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 MTX3Q5HYI7 312 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 RAET1LQ5VY80 246 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 FKBP9P1Q75LS8 142 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TRILQ7L0X0 811 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 RANBP3LQ86VV4 465 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 CARM1Q86X55 608 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 RBM45Q8IUH3 476 aaKnown RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 ZNF843Q8N446 348 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 FAM86B1Q8N7N1 296 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 OR6T1Q8NGN1 323 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 OR5M1Q8NGP8 315 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TMEM234Q8WY98 164 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 ST8SIA1Q92185 356 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 UTP4Q969X6 686 aaKnown RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 PYURFQ96I23 114 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 MRGPRX4Q96LA9 322 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 LRGUKQ96M69 825 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 NPAS1Q99742 590 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 ZNF559Q9BR84 538 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 PRR14Q9BWN1 585 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TRIM15Q9C019 465 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 LDAHQ9H6V9 325 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 PLSCR2Q9NRY7 297 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 ACER3Q9NUN7 267 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 TESQ9UGI8 421 aaKnown RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 RALYQ9UKM9 306 aaKnown RBP11.09□□□□□ -0.63
SHMT2-209ENST00000553949 SLC6A5Q9Y345 797 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 V9GYQ6 96 aa11.09□□□□□ -0.63
SHMT2-209ENST00000553949 EML6Q6ZMW3 1958 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 A0A1B0GVC2 190 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 TCRBV5S2A0A599 114 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 B8ZZF3 427 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 SUSD5O60279 629 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 TPST2O60704 377 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 FMO6PO60774 539 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 C1QL1O75973 258 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 WISP1O95388 367 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 NTN1O95631 604 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 GP1BBP13224 206 aa11.08□□□□□ -0.64
SHMT2-209ENST00000553949 ZNF17P17021 662 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms