RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NRACQ8N912 160 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 LRTM2Q8N967 370 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 BANPQ8N9N5 519 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 CCDC197Q8NCU1 140 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 FAM71CQ8NEG0 241 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 OR7A2PQ8NGA2 310 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 OR6M1Q8NGM8 313 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 SPATA22Q8NHS9 363 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 ERMNQ8TAM6 284 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 ELP5Q8TE02 316 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 CT55Q8WUE5 264 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 SECTM1Q8WVN6 248 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 OR8D1Q8WZ84 308 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 PHYHIPQ92561 330 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 GLYATL1Q969I3 302 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 HMCESQ96FZ2 354 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 C16orf58Q96GQ5 468 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 THOC3Q96J01 351 aaKnown RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 MAGED4Q96JG8 741 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 PRICKLE1Q96MT3 831 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 TAAR6Q96RI8 345 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 ERP44Q9BS26 406 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 LRRC1Q9BTT6 524 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 NTMT1Q9BV86 223 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 FUNDC2Q9BWH2 189 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 KRTAP1-5Q9BYS1 174 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 WWTR1Q9GZV5 400 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 ILKAPQ9H0C8 392 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 CSTL1Q9H114 145 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 GANQ9H2C0 597 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 FBXO44Q9H4M3 255 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 TFB2MQ9H5Q4 396 aaKnown RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 CSNK1G1Q9HCP0 422 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 ELOVL5Q9NYP7 299 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 PLEK2Q9NYT0 353 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 RBAKQ9NYW8 714 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 HMGXB4Q9UGU5 601 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 MRPS7Q9Y2R9 242 aaKnown RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 MRPS2Q9Y399 296 aaKnown RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 STYXL1Q9Y6J8 313 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 HRNRQ86YZ3 2850 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 A8MUI8 341 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 POLR1CO15160 346 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 MAGEB3O15480 346 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CFLARO15519 480 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SMAD6O43541 496 aaKnown RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 TLX2O43763 284 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 KIF5CO60282 957 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 KIAA0754O94854 1291 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SNX4O95219 450 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 FGF1P05230 155 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 HIST1H2AGP0C0S8 130 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 TRIM49P0CI25 452 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 TRIM49CP0CI26 452 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 THRAP10827 490 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 KRT3P12035 628 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 B4GALT1P15291 398 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 TNFRSF1BP20333 461 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ATP6V1C1P21283 382 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CA4P22748 312 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CA6P23280 308 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 GJB2P29033 226 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CASP14P31944 242 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ALDH3B1P43353 468 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ACADSBP45954 432 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SULT1E1P49888 294 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 MYL6P60660 151 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ACTR1AP61163 376 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 HERV-K104P63124 156 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 RPS21P63220 83 aaKnown RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SSBP2P81877 361 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 GTF2BQ00403 316 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 LGALS3BPQ08380 585 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 GAGE5Q13069 117 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 GAGE6Q13070 117 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 RIPK1Q13546 671 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CEACAM7Q14002 265 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 HEPACAMQ14CZ8 416 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ELOCQ15369 112 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ZKSCAN8Q15776 578 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 MAJINQ3KP22 176 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 TMEM41BQ5BJD5 291 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SPECC1LQ69YQ0 1117 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SULT1C3Q6IMI6 304 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF770Q6IQ21 691 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CEACAM20Q6UY09 585 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 TMEM64Q6YI46 380 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SCARA5Q6ZMJ2 495 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 C17orf107Q6ZR85 190 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CDHR3Q6ZTQ4 885 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CLEC20AQ6ZU45 233 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 RFPL4BQ6ZWI9 263 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ISCA2Q86U28 154 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 GKN2Q86XP6 184 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 NEXN-AS1Q8NBZ9 246 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF114Q8NC26 417 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 KBTBD8Q8NFY9 601 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 OR4D9Q8NGE8 314 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 OR52B4Q8NGK2 314 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms