RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 LCA5Q86VQ0 697 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 UBE2J2Q8N2K1 259 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 BPIFB2Q8N4F0 458 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 ATP6V1C2Q8NEY4 427 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 CLDND2Q8NHS1 167 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 RAB1BQ9H0U4 201 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 COQ10BQ9H8M1 238 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 ACSS1Q9NUB1 689 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 TREM2Q9NZC2 230 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 MTO1Q9Y2Z2 717 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 EPPK1P58107 5090 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 BIRC6Q9NR09 4857 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 UBXN8O00124 270 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 RGS14O43566 566 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 PDE5AO76074 875 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 SEMA3DO95025 777 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 IGKV1D-16P01601 117 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 OR4A8P0C604 315 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 TYK2P29597 1187 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 ATP6V0D1P61421 351 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 RASGEF1BQ0VAM2 473 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 ZKSCAN8Q15776 578 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 ADIPOQQ15848 244 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 DECR1Q16698 335 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 RAPH1Q70E73 1250 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 WDR60Q8WVS4 1066 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 SH3YL1Q96HL8 342 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 MUS81Q96NY9 551 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 SERPINI1Q99574 410 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 TMEM109Q9BVC6 243 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 SLITRK2Q9H156 845 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 ALG9Q9H6U8 611 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 UTS2RQ9UKP6 389 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 PSME2Q9UL46 239 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 ACOT9Q9Y305 439 aa13.37□□□□□ -0.27
CLSTN3-216ENST00000545663 POM121CA8CG34 1229 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 B9A039 149 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 PNPP00491 289 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 ZNF41P51814 821 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 SLC18A2Q05940 514 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 MROH9Q5TGP6 573 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 FBXW9Q5XUX1 488 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 KLC3Q6P597 504 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 VHLLQ6RSH7 139 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 TIFABQ6ZNK6 161 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 COMMD6Q7Z4G1 85 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 SLC43A2Q8N370 569 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 RNF217Q8TC41 542 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 ACMSDQ8TDX5 336 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 UBASH3BQ8TF42 649 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 DCAKDQ8WVC6 231 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 MRRFQ96E11 262 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 KRTAP17-1Q9BYP8 105 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 PLK3Q9H4B4 646 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 CA10Q9NS85 328 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 TAS2R9Q9NYW1 312 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 KLHL9Q9P2J3 617 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 ADAM29Q9UKF5 820 aa13.36□□□□□ -0.27
CLSTN3-216ENST00000545663 SUPT3HB4E1H0 165 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 SUPT3HO75486 399 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 IGFBP1P08833 259 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 DDX5P17844 614 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 MDKP21741 143 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 NTF4P34130 210 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 PPOXP50336 477 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 FOXF1Q12946 379 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 FAM83EQ2M2I3 478 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 BEND6Q5SZJ8 279 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 C9orf135Q5VTT2 229 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 LRIG3Q6UXM1 1119 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 C1QL2Q7Z5L3 287 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 METTL4Q8N3J2 472 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 SIGLECL1Q8N7X8 197 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 OR4C3Q8NH37 302 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 UBTD2Q8WUN7 234 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 ERP27Q96DN0 273 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 CDK15Q96Q40 435 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 TMPRSS13Q9BYE2 586 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 NMRAL1Q9HBL8 299 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 ZDHHC2Q9UIJ5 367 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 ANGPTL3Q9Y5C1 460 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 PCDHB14Q9Y5E9 798 aa13.35□□□□□ -0.27
CLSTN3-216ENST00000545663 A0A1W2PNR3 127 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 GXYLT2A0PJZ3 443 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 TRIM49D1C9J1S8 452 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 ZNF195O14628 629 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 PLOD3O60568 738 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 ITGA5P08648 1049 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 LINGO3P0C6S8 592 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 GAAP10253 952 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 IL13RA1P78552 427 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 GALNT1Q10472 559 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 TSNAXIP1Q2TAA8 658 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 SGO1Q5FBB7 561 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 TCHHL1Q5QJ38 904 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 FAM219BQ5XKK7 198 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 Q6ZPA2 131 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 PAGE2Q7Z2X7 111 aa13.34□□□□□ -0.27
CLSTN3-216ENST00000545663 GALNT5Q7Z7M9 940 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms