RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 EXOSC3Q9NQT5 275 aaKnown RBP10.62□□□□□ -0.71
HDAC4-216ENST00000544989 SERINC1Q9NRX5 453 aa10.62□□□□□ -0.71
HDAC4-216ENST00000544989 P2RX2Q9UBL9 471 aa10.62□□□□□ -0.71
HDAC4-216ENST00000544989 EMC9Q9Y3B6 208 aa10.62□□□□□ -0.71
HDAC4-216ENST00000544989 SPIN1Q9Y657 262 aaPredicted RBP10.62□□□□□ -0.71
HDAC4-216ENST00000544989 FBN3Q75N90 2809 aa10.62□□□□□ -0.71
HDAC4-216ENST00000544989 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 NPIPA5A0A0B4J1W7 369 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 A8MXE2 369 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 NPIPA7E9PJI5 369 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FCMRO60667 390 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 DNAJA2O60884 412 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 TNFSF13O75888 250 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 PLGP00747 810 aaPredicted RBP10.61□□□□□ -0.71
HDAC4-216ENST00000544989 NPIPA8P0DM63 369 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 NR2F1P10589 423 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 CD8BP10966 210 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 EPXP11678 715 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 UQCRBP14927 111 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 PRKCAP17252 672 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 ATP4BP51164 291 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 CARD18P57730 90 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 KCNJ10P78508 379 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FOXF1Q12946 379 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FOXF2Q12947 444 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 SKP2Q13309 424 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 HBMQ6B0K9 141 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 TYW3Q6IPR3 259 aaKnown RBP10.61□□□□□ -0.71
HDAC4-216ENST00000544989 C3orf33Q6P1S2 294 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 CBLN3Q6UW01 205 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FRRS1Q6ZNA5 592 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FAM214BQ7L5A3 538 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 TMEM200AQ86VY9 491 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 CNEP1R1Q8N9A8 125 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FAM71CQ8NEG0 241 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 OR10D3Q8NH80 312 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FBXO27Q8NI29 283 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FNDC9Q8TBE3 224 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 SLC25A43Q8WUT9 341 aaPredicted RBP10.61□□□□□ -0.71
HDAC4-216ENST00000544989 CKAP2Q8WWK9 683 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 FIG4Q92562 907 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 RAB8BQ92930 207 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 ADGRG7Q96K78 797 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 DACH2Q96NX9 599 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 TACO1Q9BSH4 297 aaKnown RBP10.61□□□□□ -0.71
HDAC4-216ENST00000544989 ARMC7Q9H6L4 198 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 GP6Q9HCN6 339 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 MRGBPQ9NV56 204 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 ELOVL5Q9NYP7 299 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 NDRG3Q9UGV2 375 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 TRIM33Q9UPN9 1127 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 MED12LQ86YW9 2145 aa10.61□□□□□ -0.71
HDAC4-216ENST00000544989 PCNX3Q9H6A9 2034 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 SHISA8B8ZZ34 492 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 C9JVG2 144 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 H0YC42 278 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 TNFSF11O14788 317 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 SMNDC1O75940 238 aaKnown RBP eCLIP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 H6PDO95479 791 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 NTN1O95631 604 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 UBTFL6P0CB48 400 aaPredicted RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 PPIBP23284 216 aaKnown RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 SLC7A1P30825 629 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 APOBEC1P41238 236 aaKnown RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 HTR3AP46098 478 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 IDH3AP50213 366 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 AGFG1P52594 562 aaKnown RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 CRISP3P54108 245 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 AQP5P55064 265 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 CASP9P55211 416 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 TPD52P55327 224 aaPredicted RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 CTBP2P56545 445 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 FADDQ13158 208 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 DAZAP2Q15038 168 aaPredicted RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 QPRTQ15274 297 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 RNPS1Q15287 305 aaKnown RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 CTU2Q2VPK5 515 aaKnown RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 TIGD2Q4W5G0 525 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 C6orf10Q5SRN2 563 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 PPP4R4Q6NUP7 873 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 LUZP2Q86TE4 346 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 PEX5LQ8IYB4 626 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 ZNF440Q8IYI8 595 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 SLC43A2Q8N370 569 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 ARFGAP2Q8N6H7 521 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 OR6K3Q8NGY3 331 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 RFWD2Q8NHY2 731 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 POC1BQ8TC44 478 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 ZFP90Q8TF47 636 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 OSTF1Q92882 214 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 STARD4Q96DR4 205 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 MARK4Q96L34 752 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 INPP5KQ9BT40 448 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 THUMPD3Q9BV44 507 aaKnown RBP10.6□□□□□ -0.71
HDAC4-216ENST00000544989 TPT1P8Q9HAU6 139 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 SLCO1B3Q9NPD5 702 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 GALNT8Q9NY28 637 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 CRIM1Q9NZV1 1036 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 PROCRQ9UNN8 238 aa10.6□□□□□ -0.71
HDAC4-216ENST00000544989 ABCA2Q9BZC7 2435 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms