RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	OR2L3	Q8NG85	312 aa		13.93	□□□□□ -0.18
CHFR-223	ENST00000544268	FAM174A	Q8TBP5	190 aa		13.93	□□□□□ -0.18
CHFR-223	ENST00000544268	RBPMS	Q93062	196 aa	Known RBP	13.93	□□□□□ -0.18
CHFR-223	ENST00000544268	LRRC61	Q9BV99	259 aa		13.93	□□□□□ -0.18
CHFR-223	ENST00000544268	SRMS	Q9H3Y6	488 aa		13.93	□□□□□ -0.18
CHFR-223	ENST00000544268	MGAT4B	Q9UQ53	548 aa		13.93	□□□□□ -0.18
CHFR-223	ENST00000544268	CENPVL1	A0A0U1RR11	272 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	HYKK	A2RU49	373 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	LYRM1	O43325	122 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	IL1A	P01583	271 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SLC2A2	P11168	524 aa	Predicted RBP	13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ATP5A1	P25705	553 aa	Known RBP	13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	BTN1A1	Q13410	526 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SLC9A5	Q14940	896 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ABHD17C	Q6PCB6	329 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	PRICKLE2	Q7Z3G6	844 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	TIGD4	Q8IY51	512 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SYT14	Q8NB59	555 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	COL26A1	Q96A83	441 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	GFM1	Q96RP9	751 aa	Known RBP	13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	POLR2J2	Q9GZM3	115 aa	Known RBP	13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ACSS1	Q9NUB1	689 aa	Predicted RBP	13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	PLEKHB1	Q9UF11	243 aa	Predicted RBP	13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ENOPH1	Q9UHY7	261 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SSR3	Q9UNL2	185 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	VPS13A	Q96RL7	3174 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268		A0A087WUU8	490 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ISM1	B1AKI9	464 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	INMT-MINDY4	F8WBC2	141 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	PLOD3	O60568	738 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	TBX19	O60806	448 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	CLEC3A	O75596	197 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	CDRT1	O95170	752 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SSTR4	P31391	388 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	AVPR1B	P47901	424 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	BLK	P51451	505 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SNRPG	P62308	76 aa	Known RBP	13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ALKBH2	Q6NS38	261 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	B3GLCT	Q6Y288	498 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SLC30A8	Q8IWU4	369 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ATP6V1C2	Q8NEY4	427 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	OR52I1	Q8NGK6	324 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	SLC37A2	Q8TED4	501 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ST8SIA4	Q92187	359 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	FOLH1B	Q9HBA9	442 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	PTTG3P	Q9NZH4	202 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	PHF11	Q9UIL8	331 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	ZNF175	Q9Y473	711 aa		13.92	□□□□□ -0.18
CHFR-223	ENST00000544268	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	GIPR	P48546	466 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	MAP2K6	P52564	334 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	CAV3	P56539	151 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	ZXDA	P98168	799 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	ID2	Q02363	134 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	ZIC1	Q15915	447 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	FAM111B	Q6SJ93	734 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	BMP8A	Q7Z5Y6	402 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	OR52H1	Q8NGJ2	320 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	C1orf216	Q8TAB5	229 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	FANK1	Q8TC84	345 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	SLC9A6	Q92581	669 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	FAM46A	Q96IP4	442 aa	Known RBP	13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	NECAB3	Q96P71	396 aa	Predicted RBP	13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	SEMA4G	Q9NTN9	838 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	UBQLN2	Q9UHD9	624 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268		A0A1W2PRQ8	180 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	SULT1B1	O43704	296 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	NTS	P30990	170 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	ARHGDIB	P52566	201 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	RAB14	P61106	215 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	UBE2I	P63279	158 aa	Known RBP	13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	BTN3A2	P78410	334 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	INSL4	Q14641	139 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	ZMYND11	Q15326	602 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	ZNF628	Q5EBL2	1059 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	SLC36A4	Q6YBV0	504 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	NKAIN4	Q8IVV8	208 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268		Q8N402	240 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	NANOGP1	Q8N7R0	232 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	GATAD2B	Q8WXI9	593 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	TM9SF4	Q92544	642 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	ZNF582	Q96NG8	517 aa	Predicted RBP	13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	OR7D2	Q96RA2	312 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	NT5DC2	Q9H857	520 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	IFT46	Q9NQC8	304 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	CES1P1	Q9UKY3	287 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	MKL2	Q9ULH7	1088 aa		13.91	□□□□□ -0.18
CHFR-223	ENST00000544268	KHNYN	O15037	678 aa	Known RBP	13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	PIP5K1C	O60331	668 aa		13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	MPZL2	O60487	215 aa		13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	THY1	P04216	161 aa		13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	PIP	P12273	146 aa	Predicted RBP	13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	FUT1	P19526	365 aa		13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	APEX1	P27695	318 aa	Known RBP	13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	SOX18	P35713	384 aa		13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	BTG1	P62324	171 aa		13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	HNRNPA0	Q13151	305 aa	Known RBP	13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	EXOSC2	Q13868	293 aa	Known RBP	13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	ZNF273	Q14593	569 aa		13.9	□□□□□ -0.18
CHFR-223	ENST00000544268	SF3A2	Q15428	464 aa	Known RBP	13.9	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms