RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TPD52L3Q96J77 140 aa15.54■□□□□ 0.08
LIG1-204ENST00000542460 NSMCE2Q96MF7 247 aa15.54■□□□□ 0.08
LIG1-204ENST00000542460 OR2B2Q9GZK3 357 aa15.54■□□□□ 0.08
LIG1-204ENST00000542460 TSPAN10Q9H1Z9 355 aaPredicted RBP15.54■□□□□ 0.08
LIG1-204ENST00000542460 MED17Q9NVC6 651 aa15.54■□□□□ 0.08
LIG1-204ENST00000542460 SAMD4AQ9UPU9 718 aaKnown RBP15.54■□□□□ 0.08
LIG1-204ENST00000542460 TMEM229AB2RXF0 380 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 FAAHO00519 579 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 ADAM11O75078 769 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 STAMBPO95630 424 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 ZNF682O95780 498 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 IGHG3P01860 377 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 NRF1Q16656 503 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 ZSCAN26Q16670 478 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 ZNF605Q86T29 641 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 YRDCQ86U90 279 aaKnown RBP15.53■□□□□ 0.08
LIG1-204ENST00000542460 ZBTB8AQ96BR9 441 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 GPR137Q96N19 417 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 ARHGDIGQ99819 225 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 SLX1AQ9BQ83 275 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 KLHDC3Q9BQ90 382 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 VDAC3Q9Y277 283 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 SLC9A8Q9Y2E8 581 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 SH3GLB1Q9Y371 365 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 B8ZZF3 427 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 FRS3O43559 492 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 HCN1O60741 890 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 PRG2P13727 222 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 EIF1P41567 113 aaKnown RBP15.53■□□□□ 0.08
LIG1-204ENST00000542460 RGS8P57771 180 aaPredicted RBP15.53■□□□□ 0.08
LIG1-204ENST00000542460 COPZ1P61923 177 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 QPRTQ15274 297 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 TOMM34Q15785 309 aaPredicted RBP15.53■□□□□ 0.08
LIG1-204ENST00000542460 PLPPR5Q32ZL2 321 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 MTX3Q5HYI7 312 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 WIPI1Q5MNZ9 446 aaPredicted RBP15.53■□□□□ 0.08
LIG1-204ENST00000542460 LCN8Q6JVE9 175 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 SPPL2CQ8IUH8 684 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 OR10Q1Q8NGQ4 319 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 ZNF563Q8TA94 476 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 TMEM234Q8WY98 164 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 ST8SIA1Q92185 356 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 LDAHQ9H6V9 325 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 PLSCR2Q9NRY7 297 aa15.53■□□□□ 0.08
LIG1-204ENST00000542460 RPH3AQ9Y2J0 694 aaPredicted RBP15.53■□□□□ 0.08
LIG1-204ENST00000542460 TRGV5A0A0B4J1U4 118 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 C7orf72A4D263 438 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 ETV2O00321 342 aaPredicted RBP15.52■□□□□ 0.07
LIG1-204ENST00000542460 AP3D1O14617 1153 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 ACOT8O14734 319 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 SUSD5O60279 629 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 WISP2O76076 250 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 ADH6P28332 368 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 GCKP35557 465 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 IDH2P48735 452 aaKnown RBP15.52■□□□□ 0.07
LIG1-204ENST00000542460 TDGF1P3P51864 188 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 ZNF136P52737 540 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 CYP2R1Q6VVX0 501 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 FKBP9P1Q75LS8 142 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 TRILQ7L0X0 811 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 RANBP3LQ86VV4 465 aaPredicted RBP15.52■□□□□ 0.07
LIG1-204ENST00000542460 NEIL3Q8TAT5 605 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 HSH2DQ96JZ2 352 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 WFDC6Q9BQY6 131 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 PIGQQ9BRB3 760 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 SLC6A15Q9H2J7 730 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 SLC7A8Q9UHI5 535 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 POMPQ9Y244 141 aa15.52■□□□□ 0.07
LIG1-204ENST00000542460 SPENQ96T58 3664 aaKnown RBP15.52■□□□□ 0.07
LIG1-204ENST00000542460 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 A0A1B0GVC2 190 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 LINC01387J3KSC0 135 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 M0R3H8 397 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 GP1BBP13224 206 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 ZNF17P17021 662 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 PRKCAP17252 672 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 ATP6V1B2P21281 511 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 SESN3P58005 492 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 HOXC5Q00444 222 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 TMEM44Q2T9K0 475 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 SLC25A53Q5H9E4 307 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 RAET1LQ5VY80 246 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 VTCN1Q7Z7D3 282 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 GHDCQ8N2G8 530 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 GTPBP8Q8N3Z3 284 aaPredicted RBP15.51■□□□□ 0.07
LIG1-204ENST00000542460 OR6T1Q8NGN1 323 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 VANGL1Q8TAA9 524 aaPredicted RBP15.51■□□□□ 0.07
LIG1-204ENST00000542460 POP5Q969H6 163 aaKnown RBP15.51■□□□□ 0.07
LIG1-204ENST00000542460 ZNF524Q96C55 264 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 MRGPRX4Q96LA9 322 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 LRGUKQ96M69 825 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 ZNF559Q9BR84 538 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 TRIM15Q9C019 465 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 EXO5Q9H790 373 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 ACER3Q9NUN7 267 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 TESQ9UGI8 421 aaKnown RBP15.51■□□□□ 0.07
LIG1-204ENST00000542460 LIPGQ9Y5X9 500 aa15.51■□□□□ 0.07
LIG1-204ENST00000542460 COL6A6A6NMZ7 2263 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 ERICH4A6NGS2 130 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 FMO6PO60774 539 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms