RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 OR14L1PQ8NHC6 308 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 B4GALNT2Q8NHY0 566 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 SLC38A5Q8WUX1 472 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 RNASE6Q93091 150 aaKnown RBP9.17□□□□□ -0.94
VPS28-204ENST00000526054 LRRC58Q96CX6 371 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 RCN3Q96D15 328 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 TMEM19Q96HH6 336 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 LRRC37BQ96QE4 947 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 THUMPD3Q9BV44 507 aaKnown RBP9.17□□□□□ -0.94
VPS28-204ENST00000526054 RTN4RQ9BZR6 473 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 SAP130Q9H0E3 1048 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 CXXC4Q9H2H0 198 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 SLC38A1Q9H2H9 487 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 IKZF5Q9H5V7 419 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 RASSF1Q9NS23 344 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.17□□□□□ -0.94
VPS28-204ENST00000526054 TAS2R10Q9NYW0 307 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 MED11Q9P086 117 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 FBXL2Q9UKC9 423 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 EDARQ9UNE0 448 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 SLC35A3Q9Y2D2 325 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 KIAA1549Q9HCM3 1950 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 PRRC2AP48634 2157 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 HEATR5AQ86XA9 2040 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 DSPPQ9NZW4 1301 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 A0A087WZY1 265 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 A0A0G2JPF8 293 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 FAM221AA4D161 298 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 SERINC4A6NH21 518 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 A6NNC1 897 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 C17orf51A8MQB3 221 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 KDM4EB2RXH2 506 aaPredicted RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 HNRNPCL2B2RXH8 293 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 HNRNPCL3B7ZW38 293 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 ZNF264O43296 627 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 HCRTR2O43614 444 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 EIF4E2O60573 245 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 HNRNPCL1O60812 293 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 EPPINO95925 133 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 CSTAP01040 98 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 IL2RAP01589 272 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 DBIP07108 87 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 NUDT7P0C024 238 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TFPTP0C1Z6 253 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 HNRNPCL4P0DMR1 293 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 ARAFP10398 606 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 HK1P19367 917 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 DNASE1P24855 282 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 ZNF41P51814 821 aaPredicted RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 CAPRIN1Q14444 709 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 FGFBP1Q14512 234 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 CYP51A1Q16850 503 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 FBXL19-AS1Q494R0 122 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 EIPR1Q53HC9 387 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 WIPI1Q5MNZ9 446 aaPredicted RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 FBXW10Q5XX13 1052 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 AP1ARQ63HQ0 302 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 EIF3MQ7L2H7 374 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 YRDCQ86U90 279 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 IFNEQ86WN2 208 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TREML1Q86YW5 311 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TGIF2LYQ8IUE0 185 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 CMIPQ8IY22 773 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TMCO5AQ8N6Q1 288 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TOR1AIP2Q8NFQ8 470 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 BBS10Q8TAM1 723 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 FAM222BQ8WU58 562 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 WDR60Q8WVS4 1066 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 C1GALT1C1Q96EU7 318 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 POM121Q96HA1 1249 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 SH3YL1Q96HL8 342 aaPredicted RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 SFXN2Q96NB2 322 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TIMP4Q99727 224 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TMUB1Q9BVT8 246 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 SPATA9Q9BWV2 254 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 PRDM14Q9GZV8 571 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 LIME1Q9H400 295 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 TMEM38AQ9H6F2 299 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 MTHFD2LQ9H903 347 aaPredicted RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 EFCAB1Q9HAE3 211 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 BCL2L10Q9HD36 194 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 FOXD3Q9UJU5 478 aaPredicted RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 CAMK2AQ9UQM7 478 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 ANGPT4Q9Y264 503 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 PLEKHA6Q9Y2H5 1048 aa9.16□□□□□ -0.94
VPS28-204ENST00000526054 MRPS18CQ9Y3D5 142 aaKnown RBP9.16□□□□□ -0.94
VPS28-204ENST00000526054 AGAP5A6NIR3 686 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 EEF1E1-BLOC1S5C9J1V9 151 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 FXYD1O00168 92 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SYT5O00445 386 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 AIM2O14862 343 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 EEF1E1O43324 174 aaKnown RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 GMFGO60234 142 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 NUDT14O95848 222 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 ACTL6AO96019 429 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 IL7RP16871 459 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 KLK2P20151 261 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 RPS4Y1P22090 263 aaKnown RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 SLC6A2P23975 617 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 CEACAM8P31997 349 aaPredicted RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms