RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SMAD9O15198 467 aaKnown RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 FRS3O43559 492 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 TCRBP04435 133 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 CD3GP09693 182 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 CHAF1BQ13112 559 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NSDHLQ15738 373 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 PAN3Q58A45 887 aaKnown RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 FRMPD2BQ6IN97 320 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 RTL10Q7L3V2 364 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 GID4Q8IVV7 300 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 LILRA3Q8N6C8 439 aaPredicted RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 OR4M2Q8NGB6 313 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 DEFB126Q9BYW3 111 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NCDNQ9UBB6 729 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 ANKRD12Q6UB98 2062 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 A0A0A6YYC8 382 aaPredicted RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 A0A0A6YYJ9 748 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 A0A1W2PRQ8 180 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 I3L1I5 382 aaPredicted RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 PRODHO43272 600 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NCR1O76036 304 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 TGM4P49221 684 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 RPS25P62851 125 aaKnown RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 RHEBQ15382 184 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 SSX2Q16385 188 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 KRBOX4Q5JUW0 171 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 PRSS36Q5K4E3 855 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 C17orf107Q6ZR85 190 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 SHFQ7M4L6 423 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 OR6N2Q8NGY6 317 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 MYEOVQ96EZ4 313 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 SLX1AQ9BQ83 275 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 KLHL9Q9P2J3 617 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 E2F1Q01094 437 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 ZNF91Q05481 1191 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 MYO7AQ13402 2215 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 LRRC37A5PQ49AS3 106 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 TMEM69Q5SWH9 247 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 PLXDC1Q8IUK5 500 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 GTPBP8Q8N3Z3 284 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-213ENST00000514442 OR2T33Q8NG76 320 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 DAZLQ92904 295 aaKnown RBP12.31□□□□□ -0.44
TCOF1-213ENST00000514442 FAM46AQ96IP4 442 aaKnown RBP12.31□□□□□ -0.44
TCOF1-213ENST00000514442 TMEM43Q9BTV4 400 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 UBR3Q6ZT12 1888 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 LDB3O75112 727 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 APBB3O95704 486 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 CSN2P05814 226 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 GABRA5P31644 462 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 RAB40BQ12829 278 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 ZNF791Q3KP31 576 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-213ENST00000514442 NKAPLQ5M9Q1 402 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 FBXL6Q8N531 539 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 ACOT4Q8N9L9 421 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 INSM2Q96T92 566 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-213ENST00000514442 ALOXE3Q9BYJ1 711 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 PTGES2Q9H7Z7 377 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 GFRA2O00451 464 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 ACPPP15309 386 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 GRPRP30550 384 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 KIAA1024LP59773 190 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 GRM7Q14831 915 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 TMEM240Q5SV17 173 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 C1orf94Q6P1W5 598 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 DNM1P34Q6PK57 102 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 NXPE3Q969Y0 559 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 SUSD2Q9UGT4 822 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 NPIPA5A0A0B4J1W7 369 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 NPIPA7E9PJI5 369 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 PEX14O75381 377 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 HTR1AP08908 422 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 NPIPA8P0DM63 369 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 SHHQ15465 462 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 THSD1Q9NS62 852 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 LAMP5Q9UJQ1 280 aa12.31□□□□□ -0.44
TCOF1-213ENST00000514442 M0R082 166 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 BET1O15155 118 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 RBBP9O75884 186 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 MMP2P08253 660 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 DUSP3P51452 185 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-213ENST00000514442 SHISA6Q6ZSJ9 500 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 MEX3DQ86XN8 651 aaKnown RBP12.3□□□□□ -0.44
TCOF1-213ENST00000514442 JAGN1Q8N5M9 183 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 PXT1Q8NFP0 134 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 CREB3L4Q8TEY5 395 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 SSX3Q99909 188 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 CDCA4Q9BXL8 241 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 SLC6A16Q9GZN6 736 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 RARRES3Q9UL19 164 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 OR7A17O14581 309 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 SOX30O94993 753 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 GPR176Q14439 515 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 XKR7Q5GH72 579 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 Q6ZSR9 355 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 ADGRF3Q8IZF5 1079 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 NLGN4XQ8N0W4 816 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 SFXN2Q96NB2 322 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 ACTRT3Q9BYD9 372 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 QRSL1Q9H0R6 528 aaKnown RBP12.3□□□□□ -0.44
TCOF1-213ENST00000514442 NIT2Q9NQR4 276 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms