RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KERAO60938 352 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ZNF324O75467 553 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 CBR3O75828 277 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 MYO1DO94832 1006 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 OR6A2O95222 327 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ATP6V1G2O95670 118 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CALCAP01258 141 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 IGKV1-17P01599 117 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 GSTA1P08263 222 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RAB4AP20338 218 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CYP3A5P20815 502 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ATP6V1C1P21283 382 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 GALP22466 123 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CCNE1P24864 410 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 PTBP1P26599 531 aaKnown RBP eCLIP1.53□□□□□ -2.16
NUP54-208ENST00000508604 GNA11P29992 359 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RRM2P31350 389 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RFC2P35250 354 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 GSSP48637 474 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 HNRNPFP52597 415 aaKnown RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 SUCLG1P53597 346 aaKnown RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 CDH6P55285 790 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ARF5P84085 180 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RAD51Q06609 339 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ABRQ12979 859 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ARHGAP19Q14CB8 494 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 KRT31Q15323 416 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ZMYND11Q15326 602 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CYTH1Q15438 398 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TRADDQ15628 312 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 UGCGQ16739 394 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TPD52L1Q16890 204 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 SAPCD1Q5SSQ6 148 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 THEM4Q5T1C6 240 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 C6orf183Q5T699 404 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 FAM46CQ5VWP2 391 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SLX4IPQ5VYV7 408 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 OR52E8Q6IFG1 317 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CASC4Q6P4E1 433 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 PODNL1Q6PEZ8 512 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 BLOC1S2Q6QNY1 142 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CLEC2AQ6UVW9 174 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 C11orf57Q6ZUT1 292 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 CYP4V2Q6ZWL3 525 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 UTS2BQ765I0 119 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 OTOAQ7RTW8 1153 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 LRRC6Q86X45 466 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 MMAAQ8IVH4 418 aaKnown RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 CDKL3Q8IVW4 592 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 IFT20Q8IY31 132 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CCDC36Q8IYA8 594 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TDHQ8IZJ6 230 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 LINC00518Q8N0U6 118 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 IQCKQ8N0W5 287 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 BBS5Q8N3I7 341 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ARFGAP2Q8N6H7 521 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 NHLRC2Q8NBF2 726 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RNF149Q8NC42 400 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 LHFPL5Q8TAF8 219 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 FIBINQ8TAL6 211 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SETD6Q8TBK2 473 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RAB3IL1Q8TBN0 382 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 GPR148Q8TDV2 347 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SLC5A11Q8WWX8 675 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 MYDGFQ969H8 173 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CCDC127Q96BQ5 260 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SNRNP40Q96DI7 357 aaKnown RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 GBP5Q96PP8 586 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TMEM237Q96Q45 408 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 VPS35Q96QK1 796 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TESK2Q96S53 571 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RIT2Q99578 217 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CITED2Q99967 270 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 INPP5KQ9BT40 448 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 NUP58Q9BVL2 599 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 GPR61Q9BZJ8 451 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RNF41Q9H4P4 317 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 TMEM206Q9H813 350 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 MINDY3Q9H8M7 445 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 IL1RL2Q9HB29 575 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SPACA1Q9HBV2 294 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SYTL2Q9HCH5 934 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 MRPS30Q9NP92 439 aaKnown RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 DDX28Q9NUL7 540 aaKnown RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 GIN1Q9NXP7 522 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TAS2R3Q9NYW6 316 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ACTR3BQ9P1U1 418 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 UXTQ9UBK9 157 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 CYTH4Q9UIA0 394 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 NUP50Q9UKX7 468 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 PYCARDQ9ULZ3 195 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ERGIC3Q9Y282 383 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 AP3M1Q9Y2T2 418 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ABCA5Q8WWZ7 1642 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TCOF1Q13428 1488 aaKnown RBP1.53□□□□□ -2.17
NUP54-208ENST00000508604 NUP160Q12769 1436 aa1.53□□□□□ -2.17
NUP54-208ENST00000508604 MYO10Q9HD67 2058 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 POLR1AO95602 1720 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 RAB3GAP2Q9H2M9 1393 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 IGLV4-60A0A075B6I1 120 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms