RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SLAMF8Q9P0V8 285 aa16.26■□□□□ 0.19
COL9A3-214ENST00000490398 ZNF175Q9Y473 711 aa16.26■□□□□ 0.19
COL9A3-214ENST00000490398 MYO9AB2RTY4 2548 aa16.26■□□□□ 0.19
COL9A3-214ENST00000490398 VPS13CQ709C8 3753 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 ETV2O00321 342 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-214ENST00000490398 DNAJA2O60884 412 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 GUSBP08236 651 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 NUDT7P0C024 238 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 ZCCHC18P0CG32 403 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 CAPN3P20807 821 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 KIR2DL3P43628 341 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 SUMO3P55854 103 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-214ENST00000490398 RPS3AP61247 264 aaKnown RBP16.25■□□□□ 0.19
COL9A3-214ENST00000490398 LRRC74AQ0VAA2 488 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 SGCBQ16585 318 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 SLC25A53Q5H9E4 307 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 PAGE3Q5JUK9 113 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 C6orf10Q5SRN2 563 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 BLOC1S3Q6QNY0 202 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 MSANTD1Q6ZTZ1 278 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 TOR1AIP2Q8NFQ8 470 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 LINC01560Q8TB33 94 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 CNOT9Q92600 299 aaKnown RBP16.25■□□□□ 0.19
COL9A3-214ENST00000490398 ITCHQ96J02 903 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 ZNF559Q9BR84 538 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 RBM24Q9BX46 236 aaKnown RBP16.25■□□□□ 0.19
COL9A3-214ENST00000490398 OPN3Q9H1Y3 402 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-214ENST00000490398 COQ10BQ9H8M1 238 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 TPT1P8Q9HAU6 139 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 HHATLQ9HCP6 504 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 GALNT8Q9NY28 637 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 CCDC167Q9P0B6 97 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 KCNN3Q9UGI6 736 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 PCDHB14Q9Y5E9 798 aa16.25■□□□□ 0.19
COL9A3-214ENST00000490398 A8MXE2 369 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 NR5A2O00482 541 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 EDF1O60869 148 aaKnown RBP16.24■□□□□ 0.19
COL9A3-214ENST00000490398 ANP32DO95626 131 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 KRT75O95678 551 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 CGAP01215 116 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 NID1P14543 1247 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 KLK2P20151 261 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 EIF1P41567 113 aaKnown RBP16.24■□□□□ 0.19
COL9A3-214ENST00000490398 STX1BP61266 288 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 CBFBQ13951 182 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 HBMQ6B0K9 141 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 OR2A2Q6IF42 318 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 LRRC74BQ6ZQY2 392 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 EIF3MQ7L2H7 374 aaKnown RBP16.24■□□□□ 0.19
COL9A3-214ENST00000490398 C10orf111Q8N326 155 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 ROBO4Q8WZ75 1007 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 NRGNQ92686 78 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 KLHL15Q96M94 604 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 TRNT1Q96Q11 434 aaKnown RBP16.24■□□□□ 0.19
COL9A3-214ENST00000490398 POLE3Q9NRF9 147 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 SLC25A37Q9NYZ2 338 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 DCTN4Q9UJW0 460 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 PACSIN3Q9UKS6 424 aa16.24■□□□□ 0.19
COL9A3-214ENST00000490398 GPC6Q9Y625 555 aaPredicted RBP16.24■□□□□ 0.19
COL9A3-214ENST00000490398 ANKHD1Q8IWZ3 2542 aaKnown RBP16.24■□□□□ 0.19
COL9A3-214ENST00000490398 AP3D1O14617 1153 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 SMNDC1O75940 238 aaKnown RBP eCLIP16.23■□□□□ 0.19
COL9A3-214ENST00000490398 TFPTP0C1Z6 253 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 NR2F1P10589 423 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 ADH6P28332 368 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 CRATP43155 626 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 SESN3P58005 492 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 KCNJ10P78508 379 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 TMEM176BQ3YBM2 270 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-214ENST00000490398 RPS26P11Q5JNZ5 115 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-214ENST00000490398 ZNF474Q6S9Z5 364 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-214ENST00000490398 ESPNLQ6ZVH7 1005 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 OSTF1Q92882 214 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 SPDL1Q96EA4 605 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 ACBD3Q9H3P7 528 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 ZNF385DQ9H6B1 395 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 RMND5AQ9H871 391 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 NPHS2Q9NP85 383 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 LIPT1Q9Y234 373 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 CREBBPQ92793 2442 aa16.23■□□□□ 0.19
COL9A3-214ENST00000490398 A0A1W2PNR3 127 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 AGAP5A6NIR3 686 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 CRHP06850 196 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 RPS4Y1P22090 263 aaKnown RBP16.22■□□□□ 0.19
COL9A3-214ENST00000490398 ELK4P28324 431 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 RYKP34925 604 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 CPOXP36551 454 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 CARD18P57730 90 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 HPCAP84074 193 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 FAM27E3Q08E93 113 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 SF3A3Q12874 501 aaKnown RBP eCLIP16.22■□□□□ 0.199e-8■■■□□ 18.1
COL9A3-214ENST00000490398 AGKQ53H12 422 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 VRK2Q86Y07 508 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 ZNF610Q8N9Z0 462 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 MRGPRX4Q96LA9 322 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 RSPO3Q9BXY4 272 aaPredicted RBP16.22■□□□□ 0.19
COL9A3-214ENST00000490398 PRRG4Q9BZD6 226 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 PIGMQ9H3S5 423 aa16.22■□□□□ 0.19
COL9A3-214ENST00000490398 DNAJB12Q9NXW2 375 aaKnown RBP16.22■□□□□ 0.19
COL9A3-214ENST00000490398 HEATR5AQ86XA9 2040 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms