RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 ZCCHC12Q6PEW1 402 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 B3GLCTQ6Y288 498 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 ZNF551Q7Z340 670 aaPredicted RBP7.22□□□□□ -1.25
USP39-216ENST00000490193 LCA5Q86VQ0 697 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 FBXL14Q8N1E6 418 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 ZNF433Q8N7K0 673 aaPredicted RBP7.22□□□□□ -1.25
USP39-216ENST00000490193 CEP112Q8N8E3 955 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 SLC16A11Q8NCK7 471 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 ZNF75CPQ92670 426 aaPredicted RBP7.22□□□□□ -1.25
USP39-216ENST00000490193 L3HYPDHQ96EM0 354 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 SH3YL1Q96HL8 342 aaPredicted RBP7.22□□□□□ -1.25
USP39-216ENST00000490193 METTL2AQ96IZ6 378 aaKnown RBP7.22□□□□□ -1.25
USP39-216ENST00000490193 MS4A4EQ96PG1 132 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 KCNF1Q9H3M0 494 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 MANSC1Q9H8J5 431 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 EQTNQ9NQ60 294 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 NINJ2Q9NZG7 142 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 ZNF180Q9UJW8 692 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 ICAM5Q9UMF0 924 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 TIMM22Q9Y584 194 aa7.22□□□□□ -1.25
USP39-216ENST00000490193 HEATR1Q9H583 2144 aaKnown RBP7.22□□□□□ -1.25
USP39-216ENST00000490193 IGKV3D-15A0A087WSY6 115 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 TRIM49D1C9J1S8 452 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 NPIPB8E9PQR5 432 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 SMAD9O15198 467 aaKnown RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 PDPK1O15530 556 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 TBX19O60806 448 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 BMP4P12644 408 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 PRKCAP17252 672 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 TAC1P20366 129 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 HNF1AP20823 631 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 ATP5F1P24539 256 aaPredicted RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 CD40P25942 277 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 P2RX1P51575 399 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 PRKAA2P54646 552 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 SRSF2Q01130 221 aaKnown RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 BTKQ06187 659 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 RASGEF1BQ0VAM2 473 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 HSPB3Q12988 150 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 SQLEQ14534 574 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 TMEM176BQ3YBM2 270 aaPredicted RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 SPDYAQ5MJ70 313 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 C1QTNF12Q5T7M4 302 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 LIPNQ5VXI9 398 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 NOXRED1Q6NXP6 359 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 SLC22A25Q6T423 547 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 KLHL17Q6TDP4 642 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 CBLN3Q6UW01 205 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 MEX3DQ86XN8 651 aaKnown RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 RFLNBQ8N5W9 214 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 NUP43Q8NFH3 380 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 ZFP28Q8NHY6 868 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 CDC26Q8NHZ8 85 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 FBXO27Q8NI29 283 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 DCAKDQ8WVC6 231 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 MSI2Q96DH6 328 aaKnown RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 MRGPRX4Q96LA9 322 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 KCNA7Q96RP8 456 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 PAFAH2Q99487 392 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 IQCGQ9H095 443 aaKnown RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 DUSP22Q9NRW4 184 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 ACSS1Q9NUB1 689 aaPredicted RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 GIN1Q9NXP7 522 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 POLR3HQ9Y535 204 aaPredicted RBP7.21□□□□□ -1.26
USP39-216ENST00000490193 SLC25A15Q9Y619 301 aa7.21□□□□□ -1.26
USP39-216ENST00000490193 IGHV3-15A0A0B4J1V0 119 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 LOC100289279A0A1B0GTE1 492 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 H3BQF6 201 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 OIP5O43482 229 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 RSL1D1O76021 490 aaKnown RBP7.2□□□□□ -1.26
USP39-216ENST00000490193 ALOX5P09917 674 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 PRPH2P23942 346 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 SLC7A1P30825 629 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 GPC1P35052 558 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 NR4A2P43354 598 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 FABP6P51161 128 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 FOXA1P55317 472 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 CHRNB3Q05901 458 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 RUNX1T1Q06455 604 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 SPOCK1Q08629 439 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 PDE7AQ13946 482 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 KIAA0040Q15053 153 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 PDK3Q15120 406 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 TOMM34Q15785 309 aaPredicted RBP7.2□□□□□ -1.26
USP39-216ENST00000490193 KLHL26Q53HC5 615 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 C4orf48Q5BLP8 95 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 FBXW9Q5XUX1 488 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 ABLIM2Q6H8Q1 611 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 IL17RELQ6ZVW7 336 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 ZNF572Q7Z3I7 529 aaPredicted RBP7.2□□□□□ -1.26
USP39-216ENST00000490193 GALNT5Q7Z7M9 940 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 SLC22A9Q8IVM8 553 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 DEPDC4Q8N2C3 294 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 COX18Q8N8Q8 333 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 ZNF527Q8NB42 609 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 OR2W6PQ8NHA6 318 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 PHOSPHO1Q8TCT1 267 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 GPR119Q8TDV5 335 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 HTRA1Q92743 480 aa7.2□□□□□ -1.26
USP39-216ENST00000490193 EGLN2Q96KS0 407 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms