RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ATP6V1C2Q8NEY4 427 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 OR52P1PQ8NH57 321 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 NFKBIDQ8NI38 313 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 TSPEARQ8WU66 669 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 CNOT9Q92600 299 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 ZNF524Q96C55 264 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 ZNF845Q96IR2 970 aaPredicted RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 CGREF1Q99674 301 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 TREX2Q9BQ50 279 aaPredicted RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 PINK1Q9BXM7 581 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 NSRP1Q9H0G5 558 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 CALHM2Q9HA72 323 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 CACYBPQ9HB71 228 aaKnown RBP13.3□□□□□ -0.28
USP4-212ENST00000486549 A4GALTQ9NPC4 353 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 MRGBPQ9NV56 204 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 ARMCX1Q9P291 453 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 CLCF1Q9UBD9 225 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 STOML1Q9UBI4 398 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 CORO2BQ9UQ03 480 aa13.3□□□□□ -0.28
USP4-212ENST00000486549 LOC100653049A0A140TA62 436 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 MBD3L4A6NDZ8 208 aaPredicted RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 MBD3L3A6NE82 208 aaPredicted RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 MBD3L5A6NJ08 208 aaPredicted RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 ENO4A6NNW6 628 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 HSPB2A8KAH6 182 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 KRT34O76011 436 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 ARAFP10398 606 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 BMP2P12643 396 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 NID1P14543 1247 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 COX6B1P14854 86 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 PGCP20142 388 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 RPS4Y1P22090 263 aaKnown RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 PSMA4P25789 261 aaKnown RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 SFTPDP35247 375 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 TIMP3P35625 211 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 EIF1AXP47813 144 aaKnown RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 MTPNP58546 118 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 RPS3AP61247 264 aaKnown RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 PLAURQ03405 335 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 SELPLGQ14242 412 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 MAPRE2Q15555 327 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 HSPB2Q16082 182 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 SGCBQ16585 318 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 LIN52Q52LA3 116 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 MRPL2Q5T653 305 aaKnown RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 AP1ARQ63HQ0 302 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 REP15Q6BDI9 236 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 POMZP3Q6PJE2 187 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 GGNQ86UU5 652 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 MED12LQ86YW9 2145 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 LIX1LQ8IVB5 337 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 LILRB4Q8NHJ6 448 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 MBD3L2Q8NHZ7 208 aaPredicted RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 ZNF563Q8TA94 476 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 ANKRD27Q96NW4 1050 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 DNAJB12Q9NXW2 375 aaKnown RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 ZNF443Q9Y2A4 671 aaPredicted RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 GPC6Q9Y625 555 aaPredicted RBP13.29□□□□□ -0.28
USP4-212ENST00000486549 DSPPQ9NZW4 1301 aa13.29□□□□□ -0.28
USP4-212ENST00000486549 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 A0A0G2JPF8 293 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 SLC22A20A6NK97 555 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 HNRNPCL2B2RXH8 293 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 HNRNPCL3B7ZW38 293 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 C19orf84I3L1E1 186 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 AP3D1O14617 1153 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 TNFSF11O14788 317 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 MRASO14807 208 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 HNRNPCL1O60812 293 aaKnown RBP13.28□□□□□ -0.28
USP4-212ENST00000486549 TGM6O95932 706 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 HNRNPCL4P0DMR1 293 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 GPX2P18283 190 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 DRD4P21917 467 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 BMP5P22003 454 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 ELK4P28324 431 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 SHC1P29353 583 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 CEACAM8P31997 349 aaPredicted RBP13.28□□□□□ -0.28
USP4-212ENST00000486549 AGFG1P52594 562 aaKnown RBP13.28□□□□□ -0.28
USP4-212ENST00000486549 ZNF136P52737 540 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 RAC1P63000 192 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 CYP51A1Q16850 503 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 TRMT5Q32P41 509 aaKnown RBP13.28□□□□□ -0.28
USP4-212ENST00000486549 CPLX4Q7Z7G2 160 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 ADGRE4PQ86SQ3 457 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 CMIPQ8IY22 773 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 GCNT2Q8N0V5 402 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 LILRA2Q8N149 483 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 METTL25Q8N6Q8 603 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 POU5F2Q8N7G0 328 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 BBS10Q8TAM1 723 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 ST8SIA1Q92185 356 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 FIG4Q92562 907 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 PMM1Q92871 262 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 WNT2BQ93097 391 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 INTS12Q96CB8 462 aaKnown RBP13.28□□□□□ -0.28
USP4-212ENST00000486549 MRGPRX4Q96LA9 322 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 TM9SF2Q99805 663 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 SLC39A3Q9BRY0 314 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 KCNJ16Q9NPI9 418 aa13.28□□□□□ -0.28
USP4-212ENST00000486549 EXOSC3Q9NQT5 275 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms