RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PGM3O95394 542 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 CLDN14O95500 239 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 GP1BBP13224 206 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 PGCP20142 388 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 TCEA1P23193 301 aaKnown RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 RNF144AP50876 292 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 GYS2P54840 703 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 EEF1A1P68104 462 aaKnown RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 CDK6Q00534 326 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 RBBP4Q09028 425 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 CYLC2Q14093 348 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 HSPB2Q16082 182 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 SERPINA11Q86U17 422 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF440Q8IYI8 595 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 TMCO5AQ8N6Q1 288 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 PCYOX1LQ8NBM8 494 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 OR8J3Q8NGG0 315 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 OR5M1Q8NGP8 315 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 LILRB4Q8NHJ6 448 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 RP9Q8TA86 221 aaKnown RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 TMEM234Q8WY98 164 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 WNT2BQ93097 391 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 MAL2Q969L2 176 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 SDCCAG3Q96C92 435 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 NPAS1Q99742 590 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 CCDC106Q9BWC9 280 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 SPATA9Q9BWV2 254 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 MYLK2Q9H1R3 596 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 KAT8Q9H7Z6 458 aaKnown RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 ACER3Q9NUN7 267 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 ALKBH4Q9NXW9 302 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 PLEKHB1Q9UF11 243 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 Q9UFV3 132 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF443Q9Y2A4 671 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 IFT52Q9Y366 437 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 NCOA6Q14686 2063 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-208ENST00000484246 CLDN24A6NM45 220 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 CLCA1A8K7I4 914 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 KDM4EB2RXH2 506 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 SHISA8B8ZZ34 492 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 H3BML4 177 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 NUDT14O95848 222 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 IL7RP16871 459 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 CCR4P51679 360 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 CLDN20P56880 219 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 MTPNP58546 118 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 SELENBP1Q13228 472 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 LARS2Q15031 903 aaKnown RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 TOMM34Q15785 309 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 CTU2Q2VPK5 515 aaKnown RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 MRPL2Q5T653 305 aaKnown RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 REEP3Q6NUK4 255 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 ESPNLQ6ZVH7 1005 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 PTOV1Q86YD1 416 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 C11orf65Q8NCR3 313 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 OR52P1PQ8NH57 321 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 CNOT9Q92600 299 aaKnown RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF524Q96C55 264 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 LRRC58Q96CX6 371 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 TM9SF2Q99805 663 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 SH3GL1Q99961 368 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 THUMPD3Q9BV44 507 aaKnown RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 PAQR5Q9NXK6 330 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 ARMCX1Q9P291 453 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 DNAJC13O75165 2243 aa14.31□□□□□ -0.12
UPF3A-208ENST00000484246 SPTAN1Q13813 2472 aaKnown RBP14.31□□□□□ -0.12
UPF3A-208ENST00000484246 COL12A1Q99715 3063 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 C5orf58C9J3I9 102 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 ADAM11O75078 769 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 IL18BPO95998 194 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 ME2P23368 584 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 PRKAR1BP31321 381 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 SUCLG1P53597 346 aaKnown RBP14.3□□□□□ -0.12
UPF3A-208ENST00000484246 PCBP3P57721 371 aaKnown RBP14.3□□□□□ -0.12
UPF3A-208ENST00000484246 SESN3P58005 492 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 RPS3AP61247 264 aaKnown RBP14.3□□□□□ -0.12
UPF3A-208ENST00000484246 SELPLGQ14242 412 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 CDSNQ15517 529 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 SLC25A35Q3KQZ1 300 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 MMEL1Q495T6 779 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 RPS26P11Q5JNZ5 115 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF836Q6ZNA1 936 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 PIGWQ7Z7B1 504 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 CPLX4Q7Z7G2 160 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 SLC30A8Q8IWU4 369 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 ACBD4Q8NC06 268 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 HIPK4Q8NE63 616 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 FBXO27Q8NI29 283 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 NFKBIDQ8NI38 313 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 KLHL15Q96M94 604 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 TRIB1Q96RU8 372 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 CACYBPQ9HB71 228 aaKnown RBP14.3□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF629Q9UEG4 869 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-208ENST00000484246 CHST2Q9Y4C5 530 aa14.3□□□□□ -0.12
UPF3A-208ENST00000484246 A1L4Q6 167 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 GJE1A6NN92 205 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 CYP7B1O75881 506 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 RCBTB2O95199 551 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 IL2RAP01589 272 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 PABPC4LP0CB38 370 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms