RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CCKBRP32239 447 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 SEC13P55735 322 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 C2orf27AQ580R0 203 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 OR2L5Q8NG80 312 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 PAQR8Q8TEZ7 354 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 TRMT61AQ96FX7 289 aaKnown RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 TMEM175Q9BSA9 504 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ISG20L2Q9H9L3 353 aaKnown RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 PDFQ9HBH1 243 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ASB4Q9Y574 426 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 PPM1DO15297 605 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ZNF35P13682 527 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 KCNJ5P48544 419 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ENPP2Q13822 863 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 CRMP1Q14194 572 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 FAM74A1Q5RGS3 127 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 LIX1LQ8IVB5 337 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 TMEFF1Q8IYR6 380 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 IRF7Q92985 503 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 FATE1Q969F0 183 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 HS6ST2Q96MM7 605 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 PLA2G12AQ9BZM1 189 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 SYT4Q9H2B2 425 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 PLA2G10O15496 165 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 VNN2O95498 520 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 CTSEP14091 401 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 DLX5P56178 289 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 CD163Q86VB7 1156 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 OR4K14Q8NGD5 310 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 LINC01599Q8WXQ3 324 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 CDS1Q92903 461 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 IGSF21Q96ID5 467 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 SLC52A3Q9NQ40 469 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 REV1Q9UBZ9 1251 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 HRH3Q9Y5N1 445 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 CABIN1Q9Y6J0 2220 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 LTBP1Q14766 1721 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 A0A1W2PQ45 241 aaPredicted RBP12.63□□□□□ -0.39
USP42-206ENST00000479544 A0A1W2PQY0 241 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 HEPACAM2A8MVW5 462 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 WASH3PC4AMC7 463 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 C1orf105O95561 183 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 NPPBP16860 134 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 PER3P56645 1201 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 SNRPGP62308 76 aaKnown RBP12.63□□□□□ -0.39
USP42-206ENST00000479544 TLE2Q04725 743 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 LTB4RQ15722 352 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 ALG10BQ5I7T1 473 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 KCTD20Q7Z5Y7 419 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 ARL14Q8N4G2 192 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 METTL27Q8N6F8 245 aaPredicted RBP12.63□□□□□ -0.39
USP42-206ENST00000479544 TMEM99Q8N816 258 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 PHOSPHO1Q8TCT1 267 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 ADAMTS14Q8WXS8 1223 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 HINT3Q9NQE9 182 aaKnown RBP12.63□□□□□ -0.39
USP42-206ENST00000479544 KNTC1P50748 2209 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 CDHR4A6H8M9 788 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 SGCEO43556 437 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 HTR2AP28223 471 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 LSSP48449 732 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 WNT3P56703 355 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 CLDN20P56880 219 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 ZNF33BQ06732 778 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 GGTA1PQ4G0N0 100 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 LRFN4Q6PJG9 635 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 METAP1DQ6UB28 335 aaPredicted RBP12.63□□□□□ -0.39
USP42-206ENST00000479544 C17orf99Q6UX52 265 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 GSG1LQ6UXU4 331 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 LIMS2Q7Z4I7 341 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 OR10H5Q8NGA6 315 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 CHTF18Q8WVB6 975 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 DPEP2Q9H4A9 486 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 AUNIPQ9H7T9 357 aa12.63□□□□□ -0.39
USP42-206ENST00000479544 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.63□□□□□ -0.39
USP42-206ENST00000479544 SDC3O75056 442 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 ADH1CP00326 375 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 DCNP07585 359 aaKnown RBP12.62□□□□□ -0.39
USP42-206ENST00000479544 TSPAN31Q12999 210 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 AANATQ16613 207 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 OR6M1Q8NGM8 313 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 TMEM239Q8WW34 195 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 PINK1Q9BXM7 581 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 MS4A7Q9GZW8 240 aaPredicted RBP12.62□□□□□ -0.39
USP42-206ENST00000479544 CST11Q9H112 138 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 TAAR2Q9P1P5 351 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 PTPRZ1P23471 2315 aaPredicted RBP12.62□□□□□ -0.39
USP42-206ENST00000479544 GXYLT2A0PJZ3 443 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 PLGP00747 810 aaPredicted RBP12.62□□□□□ -0.39
USP42-206ENST00000479544 SPARCP09486 303 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 CXCL3P19876 107 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 CD22P20273 847 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 CD79BP40259 229 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 ZFP36L2P47974 494 aaKnown RBP12.62□□□□□ -0.39
USP42-206ENST00000479544 LIPIQ6XZB0 460 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 ATCAYQ86WG3 371 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 OR5M3Q8NGP4 307 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 BRIX1Q8TDN6 353 aaKnown RBP12.62□□□□□ -0.39
USP42-206ENST00000479544 BPIFA2Q96DR5 249 aa12.62□□□□□ -0.39
USP42-206ENST00000479544 CNN2Q99439 309 aaKnown RBP12.62□□□□□ -0.39
USP42-206ENST00000479544 KATNBL1Q9H079 304 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms