RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 FAM228AQ86W67 206 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 C9orf40Q8IXQ3 194 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 CATSPER1Q8NEC5 780 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 FAM83FQ8NEG4 500 aaPredicted RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 OR4D9Q8NGE8 314 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 OR51G2Q8NGK0 314 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 TRUB1Q8WWH5 349 aaKnown RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 PPP1R16AQ96I34 528 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 CELF6Q96J87 481 aaKnown RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 SLC38A2Q96QD8 506 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 CHRDL1Q9BU40 450 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 GPR61Q9BZJ8 451 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 SMYD3Q9H7B4 428 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 VCPKMTQ9H867 229 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 B3GNT2Q9NY97 397 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 SUN2Q9UH99 717 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 RPAP1Q9BWH6 1393 aaPredicted RBP4.02□□□□□ -1.77
UPF3B-203ENST00000478840 A0A0J9YWU9 116 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 A0A1W2PPE3 182 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 SHISA9B4DS77 424 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 E9PBE3 544 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 LATO43561 262 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 GALR3O60755 368 aaPredicted RBP4.02□□□□□ -1.77
UPF3B-203ENST00000478840 RAMP3O60896 148 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 CLDN9O95484 217 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 IDSP22304 550 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 IGHV1-2P23083 117 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 RPL13AP40429 203 aaKnown RBP4.02□□□□□ -1.77
UPF3B-203ENST00000478840 MAP3K8P41279 467 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 EPS15P42566 896 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 SSR1P43307 286 aaKnown RBP4.02□□□□□ -1.77
UPF3B-203ENST00000478840 GBE1Q04446 702 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 CRMP1Q14194 572 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ATL3Q6DD88 541 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 GPRIN3Q6ZVF9 776 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 DHDDSQ86SQ9 333 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 TRIM69Q86WT6 500 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 EGFL6Q8IUX8 553 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ZNF440Q8IYI8 595 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 BBS5Q8N3I7 341 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 RAB3IL1Q8TBN0 382 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 MRPS31Q92665 395 aaKnown RBP4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ZNF689Q96CS4 500 aaPredicted RBP4.02□□□□□ -1.77
UPF3B-203ENST00000478840 C10orf35Q96D05 121 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ZNF599Q96NL3 588 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 COPS8Q99627 209 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 DPH7Q9BTV6 452 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 NAT10Q9H0A0 1025 aaKnown RBP4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ZNF385DQ9H6B1 395 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ZFP14Q9HCL3 533 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ZNF581Q9P0T4 197 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 SPATA7Q9P0W8 599 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 SLC2A6Q9UGQ3 507 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 RIMS3Q9UJD0 308 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ANGPTL2Q9UKU9 493 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 ERVW-1Q9UQF0 538 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 CA5BQ9Y2D0 317 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 NPTNQ9Y639 398 aa4.02□□□□□ -1.77
UPF3B-203ENST00000478840 TDRD15B5MCY1 1934 aaKnown RBP4.01□□□□□ -1.77
UPF3B-203ENST00000478840 LOC100131303A0A0U1RQF7 123 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 ACOD1A6NK06 481 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 KRTAP16-1A8MUX0 517 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 E9PAM4 449 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 E9PLD3 99 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 SAP18O00422 153 aaKnown RBP4.01□□□□□ -1.77
UPF3B-203ENST00000478840 CXCL13O43927 109 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 SH3BGRLO75368 114 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 SCRG1O75711 98 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 CABYRO75952 493 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 IGHV3-13P01766 116 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 PIGRP01833 764 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 ALOX5P09917 674 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 CCNCP24863 283 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 MT3P25713 68 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 FNTAP49354 379 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 HSPA2P54652 639 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 HMGCS2P54868 508 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 PRMT2P55345 433 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 OR2A2Q6IF42 318 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 ZNF497Q6ZNH5 498 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 H2BFWTQ7Z2G1 175 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 TGIF2LXQ8IUE1 241 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 VN1R17PQ8TDU5 208 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 MCCC1Q96RQ3 725 aaPredicted RBP4.01□□□□□ -1.77
UPF3B-203ENST00000478840 MCHR1Q99705 422 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 KRTAP1-5Q9BYS1 174 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 ELOVL4Q9GZR5 314 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 GLT8D2Q9H1C3 349 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 YY1AP1Q9H869 796 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 CAB39LQ9H9S4 337 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 CLEC5AQ9NY25 188 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 DHRS4-AS1Q9P1J3 65 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 ARMCX1Q9P291 453 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 SPRR3Q9UBC9 169 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 RABL2AQ9UBK7 228 aaPredicted RBP4.01□□□□□ -1.77
UPF3B-203ENST00000478840 KLK13Q9UKR3 277 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 PRPF19Q9UMS4 504 aaKnown RBP4.01□□□□□ -1.77
UPF3B-203ENST00000478840 IFT52Q9Y366 437 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 MOB4Q9Y3A3 225 aa4.01□□□□□ -1.77
UPF3B-203ENST00000478840 STYXL1Q9Y6J8 313 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms