RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TP63Q9H3D4 680 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 UBQLN4Q9NRR5 601 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 DUSP22Q9NRW4 184 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 DHDHQ9UQ10 334 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 IGFBP1P08833 259 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 NR0B1P51843 470 aaKnown RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 ERVK-25P63136 954 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 FAM189A2Q15884 450 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 DUSP5Q16690 384 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 METAP1DQ6UB28 335 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 LYSMD2Q8IV50 215 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 ZNF784Q8NCA9 323 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 OR5AK2Q8NH90 309 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 RLN3Q8WXF3 142 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 MKRN2Q9H000 416 aaKnown RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 SEMA6CQ9H3T2 930 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 C19orf53Q9UNZ5 99 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 SLC17A4Q9Y2C5 497 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 TMEM129A0AVI4 362 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 TMX2-CTNND1H3BSU7 103 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 VASPP50552 380 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 WBP2NLQ6ICG8 309 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 ZNF613Q6PF04 617 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 TMEM184AQ6ZMB5 413 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 TPRA1Q86W33 373 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 FAM83FQ8NEG4 500 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-220ENST00000477528 OR13H1Q8NG92 308 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 SLC35A4Q96G79 324 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 DOK1Q99704 481 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 PRRG4Q9BZD6 226 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 MED11Q9P086 117 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 PCDHGB2Q9Y5G2 931 aa13.62□□□□□ -0.23
HDAC6-220ENST00000477528 OTOFQ9HC10 1997 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 A0A0A6YYD5 115 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 A0A1B0GVI7 797 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 CDC40O60508 579 aaKnown RBP eCLIP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 ERP29P30040 261 aaKnown RBP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 MLC1Q15049 377 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 CTF1Q16619 201 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 NKAIN4Q8IVV8 208 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 TMEM156Q8N614 296 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 OR5L2Q8NGL0 311 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 UBQLN3Q9H347 655 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 H0Y8X5 98 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 RIDAP52758 137 aaKnown RBP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 ART1P52961 327 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 OXA1LQ15070 435 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 SHHQ15465 462 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 ARHGAP11BQ3KRB8 267 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 SLC22A10Q63ZE4 541 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 ZNF101Q8IZC7 436 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 PNLDC1Q8NA58 520 aaKnown RBP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 THAP3Q8WTV1 239 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 KLHL15Q96M94 604 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 SLC6A5Q9Y345 797 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 MEIOCA2RUB1 952 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 FAM171A2A8MVW0 826 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 ERV3-1Q14264 604 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 LRRC28Q86X40 367 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 ZNF547Q8IVP9 402 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 OR52N1Q8NH53 320 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 MED20Q9H944 212 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 SLC52A3Q9NQ40 469 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 PPP4R1LQ9P1A2 415 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 RASD1Q9Y272 281 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 GREM1O60565 184 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 PAPLNO95428 1278 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 THBS1P07996 1170 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 SLC18B1Q6NT16 456 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 ACSM5Q6NUN0 579 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 PMM1Q92871 262 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 RANBP3Q9H6Z4 567 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-220ENST00000477528 MKL2Q9ULH7 1088 aa13.61□□□□□ -0.23
HDAC6-220ENST00000477528 A0A1B0GWA3 101 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 TP53I11O14683 189 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 H2BFMP0C1H6 154 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 GSTT2P0CG29 244 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 NRARPQ7Z6K4 114 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 ETFBKMTQ8IXQ9 262 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 PIAS4Q8N2W9 510 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 FBXL6Q8N531 539 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 SDF2Q99470 211 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 DEFB126Q9BYW3 111 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 OSGIN1Q9UJX0 560 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 TRDV1A0A1B0GX56 115 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 SOCS6O14544 535 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 PLGP00747 810 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 RPS19P39019 145 aaKnown RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 FRKP42685 505 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 YBX1P67809 324 aaKnown RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 FOXK2Q01167 660 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 TRMT12Q53H54 448 aaKnown RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 KLHL26Q53HC5 615 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 OR7G2Q8NG99 324 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 OR6N1Q8NGY5 312 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 KCTD12Q96CX2 325 aaKnown RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 CNRIP1Q96F85 164 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-220ENST00000477528 TNFRSF13CQ96RJ3 184 aa13.6□□□□□ -0.23
HDAC6-220ENST00000477528 SLC6A20Q9NP91 592 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms