RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	RAB40B	Q12829	278 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	PDZK1IP1	Q13113	114 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	SNTB2	Q13425	540 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	PPIG	Q13427	754 aa	Known RBP eCLIP	4.38	□□□□□ -1.71	1e-7	■■□□□ 13.3
PTCD3-212	ENST00000477520	OR2F1	Q13607	317 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	LRRC32	Q14392	662 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	HAGH	Q16775	308 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	SLC25A52	Q3SY17	297 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	KRBOX4	Q5JUW0	171 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CERCAM	Q5T4B2	595 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	RIPPLY2	Q5TAB7	128 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	HBM	Q6B0K9	141 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	NADSYN1	Q6IA69	706 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR5M10	Q6IEU7	315 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	FRMPD2B	Q6IN97	320 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	MRNIP	Q6NTE8	343 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	H3F3C	Q6NXT2	135 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CES3	Q6UWW8	571 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	USP30	Q70CQ3	517 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	GAREM2	Q75VX8	874 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ANKRD33	Q7Z3H0	272 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	NAA40	Q86UY6	237 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	UNC93A	Q86WB7	457 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	SERPINA12	Q8IW75	414 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ZBTB8OS	Q8IWT0	167 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	STK40	Q8N2I9	435 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CPXM2	Q8N436	756 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	FAM86B1	Q8N7N1	296 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	SLC24A4	Q8NFF2	622 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	BPIFC	Q8NFQ6	507 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR10G2	Q8NGC3	310 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR1J4	Q8NGS1	313 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR10K1	Q8NGX5	313 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	GNPDA2	Q8TDQ7	276 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	RNF139	Q8WU17	664 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	LCN9	Q8WX39	176 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CFHR4	Q92496	578 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ARL11	Q969Q4	196 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	PNPLA2	Q96AD5	504 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	SLC22A18	Q96BI1	424 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	C1GALT1C1	Q96EU7	318 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	RRNAD1	Q96FB5	475 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CXorf58	Q96LI9	332 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	NECTIN4	Q96NY8	510 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	TEFM	Q96QE5	360 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	TRIB3	Q96RU7	358 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ATOH8	Q96SQ7	321 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	S100A13	Q99584	98 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ATF6B	Q99941	703 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	DOHH	Q9BU89	302 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CRB3	Q9BUF7	120 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	WRAP53	Q9BUR4	548 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	MS4A7	Q9GZW8	240 aa	Predicted RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	MFSD1	Q9H3U5	465 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CLMP	Q9H6B4	373 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ALG9	Q9H6U8	611 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	RNF167	Q9H6Y7	350 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	METTL17	Q9H7H0	456 aa	Predicted RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	BCO1	Q9HAY6	547 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	PLEKHA1	Q9HB21	404 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	SARS2	Q9NP81	518 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	FGF20	Q9NP95	211 aa	Predicted RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	LTB4R2	Q9NPC1	389 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	KRCC1	Q9NPI7	259 aa	Predicted RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	MIEF1	Q9NQG6	463 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CTPS2	Q9NRF8	586 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ACSS1	Q9NUB1	689 aa	Predicted RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	PARPBP	Q9NWS1	579 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	TAS2R5	Q9NYW4	299 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	ABRACL	Q9P1F3	81 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	COMMD3	Q9UBI1	195 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	RPS6KB2	Q9UBS0	482 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	TRPS1	Q9UHF7	1281 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	FBXO10	Q9UK96	956 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	FBXL4	Q9UKA2	621 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CA14	Q9ULX7	337 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	RUVBL1	Q9Y265	456 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	NPFFR2	Q9Y5X5	522 aa		4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	CFAP20	Q9Y6A4	193 aa	Known RBP	4.38	□□□□□ -1.71
PTCD3-212	ENST00000477520	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	IGKV6-21	A0A0C4DH24	114 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TMEM150B	A6NC51	233 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	KDM4E	B2RXH2	506 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TRDC	B7Z8K6	153 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	WASH3P	C4AMC7	463 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	LRRN3	E7EW58	273 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520		E9PI62	339 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	MKRN2OS	H3BPM6	223 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	LGALS8	O00214	317 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	NDUFS8	O00217	210 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	DCLK1	O15075	740 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	MFSD11	O43934	449 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SUSD5	O60279	629 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	BRINP1	O60477	761 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	UGDH	O60701	494 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PQBP1	O60828	265 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	KHDRBS3	O75525	346 aa	Known RBP	4.37	□□□□□ -1.71

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