RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SOX30O94993 753 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 TUBBP07437 444 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 UBL4AP11441 157 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 ADH6P28332 368 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 EIF1P41567 113 aaKnown RBP12.58□□□□□ -0.39
UPF3A-204ENST00000475218 NME5P56597 212 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 FOXD4Q12950 439 aaPredicted RBP12.58□□□□□ -0.39
UPF3A-204ENST00000475218 QPRTQ15274 297 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 GPR68Q15743 365 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 EXOC3L2Q2M3D2 409 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 FAM174BQ3ZCQ3 159 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 TYW3Q6IPR3 259 aaKnown RBP12.58□□□□□ -0.39
UPF3A-204ENST00000475218 TNFAIP8L2Q6P589 184 aaPredicted RBP12.58□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF614Q8N883 585 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 FAM71CQ8NEG0 241 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 OR5W2Q8NH69 310 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 SLC39A3Q9BRY0 314 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 STOML1Q9UBI4 398 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 MCTS1Q9ULC4 181 aaKnown RBP12.58□□□□□ -0.39
UPF3A-204ENST00000475218 GPR45Q9Y5Y3 372 aa12.58□□□□□ -0.39
UPF3A-204ENST00000475218 GPC6Q9Y625 555 aaPredicted RBP12.58□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF264O43296 627 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 KIAA0513O60268 411 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 EIF4E2O60573 245 aaKnown RBP12.58□□□□□ -0.4
UPF3A-204ENST00000475218 ADAM11O75078 769 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 STX11O75558 287 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 H6PDO95479 791 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 CPSF4O95639 269 aaKnown RBP12.58□□□□□ -0.4
UPF3A-204ENST00000475218 NUDT14O95848 222 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 OR12D1P0DN82 309 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 UQCRC2P22695 453 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 CDKN2CP42773 168 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 CARD18P57730 90 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 BHLHB9Q6PI77 547 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 MAVSQ7Z434 540 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 RFWD2Q8NHY2 731 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 TLCD1Q96CP7 247 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 NEURL3Q96EH8 262 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 MRGPRX4Q96LA9 322 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 CCDC115Q96NT0 180 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 PAIP2Q9BPZ3 127 aaKnown RBP12.58□□□□□ -0.4
UPF3A-204ENST00000475218 INPP5KQ9BT40 448 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 MED18Q9BUE0 208 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 PRRG4Q9BZD6 226 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 SAP130Q9H0E3 1048 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 QRSL1Q9H0R6 528 aaKnown RBP12.58□□□□□ -0.4
UPF3A-204ENST00000475218 EMC9Q9Y3B6 208 aa12.58□□□□□ -0.4
UPF3A-204ENST00000475218 DUXAA6NLW8 204 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 E9PBE3 544 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 H3BNH8 94 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 GTPBP1O00178 669 aaKnown RBP12.57□□□□□ -0.4
UPF3A-204ENST00000475218 CASKO14936 926 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 KLF4O43474 513 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 SYNGR4O95473 234 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 AK1P00568 194 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 CD99P14209 185 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 ME2P23368 584 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 EPHA3P29320 983 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 PGM1P36871 562 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 KCNJ5P48544 419 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 RIPPLY3P57055 190 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 KEAP1Q14145 624 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 TMEM176BQ3YBM2 270 aaPredicted RBP12.57□□□□□ -0.4
UPF3A-204ENST00000475218 FRRS1Q6ZNA5 592 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 NUFIP2Q7Z417 695 aaKnown RBP12.57□□□□□ -0.4
UPF3A-204ENST00000475218 HMGN2P46Q86SG4 172 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 WFDC11Q8NEX6 87 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 THUMPD3Q9BV44 507 aaKnown RBP12.57□□□□□ -0.4
UPF3A-204ENST00000475218 KLHL4Q9C0H6 718 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 LAT2Q9GZY6 243 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 MARCOQ9UEW3 520 aaPredicted RBP12.57□□□□□ -0.4
UPF3A-204ENST00000475218 ZANQ9Y493 2812 aa12.57□□□□□ -0.4
UPF3A-204ENST00000475218 GOLGA8QA0A0J9YX86 632 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 A0A1W2PNR3 127 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 GOLGA8OA6NCC3 632 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 CLDN24A6NM45 220 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 GOLGA8NF8WBI6 632 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 PLGP00747 810 aaPredicted RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 GUSBP08236 651 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ENPP1P22413 925 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 HOXC12P31275 282 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 CTBP2P56545 445 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 BEND6Q5SZJ8 279 aaPredicted RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ANXA8L1Q5VT79 327 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 HHATQ5VTY9 493 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ATP6V1C2Q8NEY4 427 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 MGARPQ8TDB4 240 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ZFP90Q8TF47 636 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 XAGE5Q8WWM1 108 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ROPN1LQ96C74 230 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 PIK3IP1Q96FE7 263 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ZC3HAV1LQ96H79 300 aaKnown RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 C12orf49Q9H741 205 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 GLRX2Q9NS18 164 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 SLC6A13Q9NSD5 602 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 BTNL2Q9UIR0 455 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ROS1P08922 2347 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 IGHV3-15A0A0B4J1V0 119 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 HMGN4O00479 90 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 HDAC3O15379 428 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms