RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 TFF3Q07654 80 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 SF3A3Q12874 501 aaKnown RBP eCLIP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 FOXF2Q12947 444 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 SKP2Q13309 424 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 TOMM34Q15785 309 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 METTL21CQ5VZV1 264 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 HBMQ6B0K9 141 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 ESPNLQ6ZVH7 1005 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 GDF7Q7Z4P5 450 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 METTL25Q8N6Q8 603 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 CNEP1R1Q8N9A8 125 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 RELL2Q8NC24 303 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 OR2V1Q8NHB1 315 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 WDR60Q8WVS4 1066 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 FIG4Q92562 907 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 ARSGQ96EG1 525 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 ZNF845Q96IR2 970 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 MRGPRX4Q96LA9 322 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 KLHDC3Q9BQ90 382 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 SLC38A1Q9H2H9 487 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 SLC24A3Q9HC58 644 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 TIGARQ9NQ88 270 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 NPDC1Q9NQX5 325 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 SERINC1Q9NRX5 453 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 ZNF175Q9Y473 711 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 HCFC1P51610 2035 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 A0A1W2PP18 115 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 AGAP5A6NIR3 686 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 EVPLLA8MZ36 301 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 C5orf58C9J3I9 102 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 TNFSF11O14788 317 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 PLGP00747 810 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 DBIP07108 87 aaKnown RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 CAPN3P20807 821 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 PGM1P36871 562 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 CARD18P57730 90 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 FADDQ13158 208 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 RGNQ15493 299 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 TMEM176BQ3YBM2 270 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 POMZP3Q6PJE2 187 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 GGNQ86UU5 652 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 CMIPQ8IY22 773 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 OR10D3Q8NH80 312 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 FNDC9Q8TBE3 224 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 KLHL15Q96M94 604 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 LEF1Q9UJU2 399 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 FOXD3Q9UJU5 478 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-203ENST00000474047 ZNF232Q9UNY5 417 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 CORO2BQ9UQ03 480 aa12.79□□□□□ -0.36
VAMP4-203ENST00000474047 PKDREJQ9NTG1 2253 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 SYT5O00445 386 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 CXCL13O43927 109 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 SMNDC1O75940 238 aaKnown RBP eCLIP12.78□□□□□ -0.36
VAMP4-203ENST00000474047 PSMA4P25789 261 aaKnown RBP12.78□□□□□ -0.36
VAMP4-203ENST00000474047 SLC7A1P30825 629 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 SLC6A8P48029 635 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 MVDP53602 400 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 MERTKQ12866 999 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 MYBPHQ13203 477 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 PAGE3Q5JUK9 113 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 AP1ARQ63HQ0 302 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 OR52P1PQ8NH57 321 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 SLC38A5Q8WUX1 472 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 ST8SIA1Q92185 356 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 OSTF1Q92882 214 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 RNASE6Q93091 150 aaKnown RBP12.78□□□□□ -0.36
VAMP4-203ENST00000474047 PIGMQ9H3S5 423 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 MRGBPQ9NV56 204 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 NDUFAF1Q9Y375 327 aa12.78□□□□□ -0.36
VAMP4-203ENST00000474047 A0A0G2JPF8 293 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 A0A0J9YW62 118 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 CLDN24A6NM45 220 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 HNRNPCL2B2RXH8 293 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 HNRNPCL3B7ZW38 293 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 ADAMDEC1O15204 470 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 HNRNPCL1O60812 293 aaKnown RBP12.77□□□□□ -0.36
VAMP4-203ENST00000474047 CRHP06850 196 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 TFPTP0C1Z6 253 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 HNRNPCL4P0DMR1 293 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 UQCRBP14927 111 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 IL11P20809 199 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 SSTR2P30874 369 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 PEX19P40855 299 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 MDH1P40925 334 aaKnown RBP12.77□□□□□ -0.36
VAMP4-203ENST00000474047 SESN3P58005 492 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 SIRPAP78324 504 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 SELENBP1Q13228 472 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 LARS2Q15031 903 aaKnown RBP12.77□□□□□ -0.36
VAMP4-203ENST00000474047 LRIF1Q5T3J3 769 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 GTF2IRD2BQ6EKJ0 949 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 LUZP2Q86TE4 346 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 GTF2IRD2Q86UP8 949 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 KIF18BQ86Y91 864 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 DMRTC2Q8IXT2 367 aaPredicted RBP12.77□□□□□ -0.36
VAMP4-203ENST00000474047 CNOT9Q92600 299 aaKnown RBP12.77□□□□□ -0.36
VAMP4-203ENST00000474047 ARMC7Q9H6L4 198 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 SLAMF8Q9P0V8 285 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 PACSIN3Q9UKS6 424 aa12.77□□□□□ -0.36
VAMP4-203ENST00000474047 MED12LQ86YW9 2145 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms