RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CD1EP15812 388 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 IL7RP16871 459 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 PGCP20142 388 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 GUCY1A3Q02108 690 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 MERTKQ12866 999 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 TMEM176BQ3YBM2 270 aaPredicted RBP16.79■□□□□ 0.28
USP39-209ENST00000458268 OR2A2Q6IF42 318 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 BLOC1S3Q6QNY0 202 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 TMEM200AQ86VY9 491 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 LSRQ86X29 649 aaPredicted RBP16.79■□□□□ 0.28
USP39-209ENST00000458268 ZZZ3Q8IYH5 903 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 ZNF295-AS1Q8N0V1 137 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 METTL25Q8N6Q8 603 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 RNASE6Q93091 150 aaKnown RBP16.79■□□□□ 0.28
USP39-209ENST00000458268 ZFP3Q96NJ6 502 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 RBM24Q9BX46 236 aaKnown RBP16.79■□□□□ 0.28
USP39-209ENST00000458268 TMEM120AQ9BXJ8 343 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 SLC38A1Q9H2H9 487 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 CACYBPQ9HB71 228 aaKnown RBP16.79■□□□□ 0.28
USP39-209ENST00000458268 FGFR1OP2Q9NVK5 253 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 MCTS1Q9ULC4 181 aaKnown RBP16.79■□□□□ 0.28
USP39-209ENST00000458268 TRIM33Q9UPN9 1127 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 SLC35A3Q9Y2D2 325 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 C7orf72A4D263 438 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 CLIC1O00299 241 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 AQP8O94778 261 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 ZCCHC18P0CG32 403 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 TROVE2P10155 538 aaKnown RBP eCLIP16.78■□□□□ 0.28
USP39-209ENST00000458268 CCNA2P20248 432 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 PSMA4P25789 261 aaKnown RBP16.78■□□□□ 0.28
USP39-209ENST00000458268 SLC7A1P30825 629 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 SLC6A8P48029 635 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 KCNJ10P78508 379 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 PAGE3Q5JUK9 113 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 LRRC74BQ6ZQY2 392 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 ESPNLQ6ZVH7 1005 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 ROBO4Q8WZ75 1007 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 CNOT9Q92600 299 aaKnown RBP16.78■□□□□ 0.28
USP39-209ENST00000458268 OSTF1Q92882 214 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 ZNF524Q96C55 264 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 REXO5Q96IC2 774 aaKnown RBP16.78■□□□□ 0.28
USP39-209ENST00000458268 UCN2Q96RP3 112 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 SLAMF8Q9P0V8 285 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 PACSIN3Q9UKS6 424 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 ZNF175Q9Y473 711 aa16.78■□□□□ 0.28
USP39-209ENST00000458268 A0A096LPI6 279 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 A0A1W2PNR3 127 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 C5orf58C9J3I9 102 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 IL18BPO95998 194 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 NUDT7P0C024 238 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 TFPIP10646 304 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 FCGR2AP12318 317 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 IGFBP2P18065 325 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 ELK4P28324 431 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 SSTR2P30874 369 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 PGM1P36871 562 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 KIR2DL3P43628 341 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 KCNJ5P48544 419 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 ATP4BP51164 291 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 MVDP53602 400 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 CTBP2P56545 445 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 SESN3P58005 492 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 TXNL4AP83876 142 aaKnown RBP16.77■□□□□ 0.28
USP39-209ENST00000458268 GNA13Q14344 377 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 VRK2Q86Y07 508 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 PEX5LQ8IYB4 626 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 TMEM234Q8WY98 164 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 MAL2Q969L2 176 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 TMEM19Q96HH6 336 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 MRGPRX4Q96LA9 322 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 SAP130Q9H0E3 1048 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 OPN3Q9H1Y3 402 aaPredicted RBP16.77■□□□□ 0.28
USP39-209ENST00000458268 RAD21L1Q9H4I0 556 aa16.77■□□□□ 0.28
USP39-209ENST00000458268 GJE1A6NN92 205 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 SYT5O00445 386 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 AP3D1O14617 1153 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 ANGPT2O15123 496 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 EFNA2O43921 213 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 CRISP3P54108 245 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 CARD18P57730 90 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 SELENBP1Q13228 472 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 RGNQ15493 299 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 CTU2Q2VPK5 515 aaKnown RBP16.76■□□□□ 0.27
USP39-209ENST00000458268 MRPL2Q5T653 305 aaKnown RBP16.76■□□□□ 0.27
USP39-209ENST00000458268 FBXW10Q5XX13 1052 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 OR52P1PQ8NH57 321 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 LINC01560Q8TB33 94 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 OR5B2Q96R09 309 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 RABEP2Q9H5N1 569 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 MTHFD2LQ9H903 347 aaPredicted RBP16.76■□□□□ 0.27
USP39-209ENST00000458268 GALNT8Q9NY28 637 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 CALML5Q9NZT1 146 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 ABCA12Q86UK0 2595 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 ITPR2Q14571 2701 aa16.76■□□□□ 0.27
USP39-209ENST00000458268 IGHV3-15A0A0B4J1V0 119 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 AGAP5A6NIR3 686 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 TNFSF13O75888 250 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 DBIP07108 87 aaKnown RBP16.75■□□□□ 0.27
USP39-209ENST00000458268 IDH2P48735 452 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms