RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ZNF791Q3KP31 576 aaPredicted RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 PM20D1Q6GTS8 502 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 KDELC1Q6UW63 502 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 DUSP19Q8WTR2 217 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 ISL2Q96A47 359 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 ARHGAP9Q9BRR9 750 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 URM1Q9BTM9 101 aaKnown RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 ISYNA1Q9NPH2 558 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 ACSS1Q9NUB1 689 aaPredicted RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 ZCCHC3Q9NUD5 404 aaKnown RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 TMEM100Q9NV29 134 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 ZDHHC3Q9NYG2 299 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 RRASP10301 218 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 MGMTP16455 207 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 CCR8P51685 355 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 SCGB2A2Q13296 93 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 PPA1Q15181 289 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 SAXO2Q658L1 398 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 SLC8B1Q6J4K2 584 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 UNQ6126/PRO20091Q6UXV3 157 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 MBOAT1Q6ZNC8 495 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 OR51M1Q9H341 326 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 STYXL1Q9Y6J8 313 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 ELOA3CA0A087WX78 387 aaPredicted RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 A0A0B4J203 849 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 G3V2L1 256 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 TSPAN6O43657 245 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 CSTBP04080 98 aaKnown RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 LMO2P25791 158 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 MPIP34949 423 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 MAP2K6P52564 334 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 UNC50Q53HI1 259 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 FIP1L1Q6UN15 594 aaKnown RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 GLB1L2Q8IW92 636 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 GLYATL2Q8WU03 294 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 SDHAF3Q9NRP4 125 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 A0A0A6YYJ9 748 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 PLGP00747 810 aaPredicted RBP12.51□□□□□ -0.41
USP40-208ENST00000450966 CST2P09228 141 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 C1GALT1C1LP0DN25 315 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 ODF4Q2M2E3 257 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 VASNQ6EMK4 673 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 SLC39A7Q92504 469 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 HS6ST2Q96MM7 605 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 KLHL42Q9P2K6 505 aa12.51□□□□□ -0.41
USP40-208ENST00000450966 YJEFN3A6XGL0 299 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 K7ERU9 68 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 ELK1P19419 428 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 EPHA4P54764 986 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 GP2P55259 537 aaKnown RBP12.5□□□□□ -0.41
USP40-208ENST00000450966 SGCBQ16585 318 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 RPS27LQ71UM5 84 aaKnown RBP12.5□□□□□ -0.41
USP40-208ENST00000450966 SIAH3Q8IW03 269 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 SERPINA12Q8IW75 414 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 OR5H2Q8NGV7 314 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 OR5W2Q8NH69 310 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 ZNF384Q8TF68 577 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 KLK6Q92876 244 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 PTP4A1Q93096 173 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 SLC25A31Q9H0C2 315 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 LDAHQ9H6V9 325 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 TRAPPC4Q9Y296 219 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 TMEM82A0PJX8 343 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 MRPL3P09001 348 aaKnown RBP12.5□□□□□ -0.41
USP40-208ENST00000450966 RAB5AP20339 215 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 OC90Q02509 493 aaPredicted RBP12.5□□□□□ -0.41
USP40-208ENST00000450966 INCA1Q0VD86 236 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 GPR176Q14439 515 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 TUSC1Q2TAM9 212 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 OR8D4Q8NGM9 314 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 SYNPRQ8TBG9 265 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 NETO1Q8TDF5 533 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 NPAS1Q99742 590 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 TMEM43Q9BTV4 400 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 TINAGL1Q9GZM7 467 aaPredicted RBP12.5□□□□□ -0.41
USP40-208ENST00000450966 ESRP2Q9H6T0 727 aaKnown RBP12.5□□□□□ -0.41
USP40-208ENST00000450966 SYNPO2LQ9H987 977 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 GDE1Q9NZC3 331 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 POMT2Q9UKY4 750 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 KCNS2Q9ULS6 477 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 UMAD1C9J7I0 102 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 KDELR3O43731 214 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 CBLP22681 906 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 CTHP32929 405 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 LIPAP38571 399 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 TMEM130Q8N3G9 435 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 OR5AK3PQ8NH89 298 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 APH1BQ8WW43 257 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 EFCAB11Q9BUY7 163 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 LRP5LA4QPB2 252 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 MEIS3P2A8K0S8 358 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 PIRO00625 290 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 CCL22O00626 93 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 PMS2P2O95744 297 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 MMP7P09237 267 aaPredicted RBP12.5□□□□□ -0.41
USP40-208ENST00000450966 SPNP16150 400 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 GPX3P22352 226 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 RFC3P40938 356 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 CCR6P51684 374 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 MLLT10P55197 1068 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms