RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF117Q03924 483 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 LRRC74AQ0VAA2 488 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 ITGADQ13349 1161 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PTGR1Q14914 329 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 ZNF239Q16600 458 aaKnown RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 PGS1Q32NB8 556 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 TMEM176BQ3YBM2 270 aaPredicted RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 SLC25A53Q5H9E4 307 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 SFRP5Q5T4F7 317 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 CCNJQ5T5M9 372 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 ANXA8L1Q5VT79 327 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 C3orf33Q6P1S2 294 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 EIF3MQ7L2H7 374 aaKnown RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 FCRLAQ7L513 359 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 C16orf62Q7Z3J2 963 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 RIMKLAQ8IXN7 391 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 GSPT2Q8IYD1 628 aaKnown RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 FBXO27Q8NI29 283 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 FBXO30Q8TB52 745 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 GPR119Q8TDV5 335 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 ZFP90Q8TF47 636 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 NUDT8Q8WV74 236 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 ROBO4Q8WZ75 1007 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PMM1Q92871 262 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 KISS1RQ969F8 398 aaPredicted RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 ZHX1-C8orf76Q96EF9 292 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PERPQ96FX8 193 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PLPPR2Q96GM1 343 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 COX4I2Q96KJ9 171 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 Q96MF0 132 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 SDF2Q99470 211 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 TMEM204Q9BSN7 226 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 C12orf65Q9H3J6 166 aaKnown RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 GSX1Q9H4S2 264 aaPredicted RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 C12orf49Q9H741 205 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 BCO1Q9HAY6 547 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 POLE3Q9NRF9 147 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 SIRT3Q9NTG7 399 aaPredicted RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 ZNF701Q9NV72 531 aaPredicted RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 GPATCH2Q9NW75 528 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 FBXO34Q9NWN3 711 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 ASIC5Q9NY37 505 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 EMC3Q9P0I2 261 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 CLEC4AQ9UMR7 237 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 SLC35A3Q9Y2D2 325 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 RNF115Q9Y4L5 304 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PTGDR2Q9Y5Y4 395 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PRSS51A0A1B0GVH4 220 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 SERINC4A6NH21 518 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ZNF724A8MTY0 619 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 SHISA8B8ZZ34 492 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 NPIPB9F8W1W9 429 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 H7C1Q1 480 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ETV2O00321 342 aaPredicted RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 GPR171O14626 319 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 TM9SF1O15321 606 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 SIAH2O43255 324 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 DNPH1O43598 174 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 C6orf47O95873 294 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 CSTAP01040 98 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 OPN1LWP04000 364 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 THBDP07204 575 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ENPP1P22413 925 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 IDUAP35475 653 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 APOBEC1P41238 236 aaKnown RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 HTR3AP46098 478 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 CLNS1AP54105 237 aaKnown RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 RPS4XP62701 263 aaKnown RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 HBA1P69905 142 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 RASGEF1BQ0VAM2 473 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 FOXF1Q12946 379 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 GNA13Q14344 377 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 CAPRIN1Q14444 709 aaKnown RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 PDK3Q15120 406 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 CD226Q15762 336 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ZNF141Q15928 474 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ARHGAP11BQ3KRB8 267 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 FAM219BQ5XKK7 198 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 AP1ARQ63HQ0 302 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 DNAJC14Q6Y2X3 702 aaPredicted RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 Q6ZT83 130 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 C6orf120Q7Z4R8 191 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ZAR1Q86SH2 424 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 WFDC8Q8IUA0 241 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 GABRG1Q8N1C3 465 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 DEPDC4Q8N2C3 294 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 TMCO5AQ8N6Q1 288 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 TRIML2Q8N7C3 387 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ZNF614Q8N883 585 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 OR8J2Q8NGG1 315 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 POC1BQ8TC44 478 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 AGR3Q8TD06 166 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 MIPOL1Q8TD10 442 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 FBXW5Q969U6 566 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 S100PBPQ96BU1 408 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 OR7D2Q96RA2 312 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 TMEM109Q9BVC6 243 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 POTEKPQ9BYX7 375 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 DPY30Q9C005 99 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 LAT2Q9GZY6 243 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms