RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 GYPBP06028 91 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SNRNP70P08621 437 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 DUSP3P51452 185 aaPredicted RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 MCCD1P59942 119 aaPredicted RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 HOXC5Q00444 222 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 LACC1Q8IV20 430 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CLDN22Q8N7P3 220 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 GIMAP1Q8WWP7 306 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TANKQ92844 425 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF583Q96ND8 569 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 LMF2Q9BU23 707 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 RBM24Q9BX46 236 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 EVA1AQ9H8M9 152 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF160Q9HCG1 818 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TXNL4BQ9NX01 149 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CXXC1Q9P0U4 656 aaPredicted RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 PSORS1C1Q9UIG5 152 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 NENFQ9UMX5 172 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SLC35A3Q9Y2D2 325 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CITO14578 2027 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 A0A0D9SG52 128 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 A0A0U1RQS6 177 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CDHR4A6H8M9 788 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TSTD3H0UI37 97 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TXNL1O43396 289 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 LATO43561 262 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 HLA-AP01891 365 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 LIPCP11150 499 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CCL5P13501 91 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 PSMB1P20618 241 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 NTSR1P30989 418 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CCR7P32248 378 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TSPAN31Q12999 210 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF169Q14929 603 aaPredicted RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 DCST2Q5T1A1 773 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 Q6ZPB1 254 aaPredicted RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 RFPL4BQ6ZWI9 263 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CLEC14AQ86T13 490 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SULF2Q8IWU5 870 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SLC35F3Q8IY50 421 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TMEM130Q8N3G9 435 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 BPIFB2Q8N4F0 458 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TTC9BQ8N6N2 239 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 DNAAF1Q8NEP3 725 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TBC1D20Q96BZ9 403 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 UBXN10Q96LJ8 280 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SORBS1Q9BX66 1292 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 PRMT8Q9NR22 394 aaPredicted RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 LRP6O75581 1613 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 OR6C65A6NJZ3 312 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 EFCAB7A8K855 629 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SMAD6O43541 496 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 FZD7O75084 574 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SCGB2A1O75556 95 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 ACTL6BO94805 426 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 EPHA1P21709 976 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 HBA1P69905 142 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 LTBQ06643 244 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CAMK2DQ13557 499 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 OPCMLQ14982 345 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 PLK5Q496M5 336 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF542PQ5EBM4 170 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CLVS2Q5SYC1 327 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 RPL22L1Q6P5R6 122 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 MEX3BQ6ZN04 569 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SLC46A3Q7Z3Q1 461 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 MRPL10Q7Z7H8 261 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 PLXDC1Q8IUK5 500 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 GLB1L2Q8IW92 636 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 STEAP2Q8NFT2 490 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 ARRDC2Q8TBH0 407 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 CDS1Q92903 461 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 MICU1Q9BPX6 476 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 PSD2Q9BQI7 771 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 GPR174Q9BXC1 333 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 HRH4Q9H3N8 390 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 LUZP4Q9P127 313 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 TESQ9UGI8 421 aaKnown RBP7.3□□□□□ -1.24
NEDD9-204ENST00000448183 RARRES3Q9UL19 164 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 COPS3Q9UNS2 423 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SLC22A7Q9Y694 548 aa7.3□□□□□ -1.24
NEDD9-204ENST00000448183 SDK1Q7Z5N4 2213 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 NPIPA5A0A0B4J1W7 369 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 ANKRD33BA6NCL7 494 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 OTOL1A6NHN0 477 aaPredicted RBP7.29□□□□□ -1.24
NEDD9-204ENST00000448183 CCDC85CA6NKD9 419 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 A8MXE2 369 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 NPIPA7E9PJI5 369 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 SGCEO43556 437 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 DPM1O60762 260 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 RDH16O75452 317 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 GABARAPO95166 117 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 IQCF3P0C7M6 154 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 ZNF888P0CJ79 500 aaPredicted RBP7.29□□□□□ -1.24
NEDD9-204ENST00000448183 NPIPA8P0DM63 369 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 PPP3CBP16298 524 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 RRAS2P62070 204 aaPredicted RBP7.29□□□□□ -1.24
NEDD9-204ENST00000448183 RUNX3Q13761 415 aa7.29□□□□□ -1.24
NEDD9-204ENST00000448183 SYPL1Q16563 259 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms