RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 NOXRED1Q6NXP6 359 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 ZCCHC12Q6PEW1 402 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 KLHL17Q6TDP4 642 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 RFLNBQ8N5W9 214 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 DCAKDQ8WVC6 231 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 ZNF775Q96BV0 537 aaPredicted RBP12.65□□□□□ -0.38
HMGN1-208ENST00000443046 L3HYPDHQ96EM0 354 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 C16orf58Q96GQ5 468 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 MRGPRX4Q96LA9 322 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 MS4A4EQ96PG1 132 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 PAFAH2Q99487 392 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 EML4Q9HC35 981 aaKnown RBP12.65□□□□□ -0.38
HMGN1-208ENST00000443046 TMEM216Q9P0N5 145 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 ZNF180Q9UJW8 692 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 POU2F3Q9UKI9 436 aa12.65□□□□□ -0.38
HMGN1-208ENST00000443046 TRRAPQ9Y4A5 3859 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 IGKV3D-15A0A087WSY6 115 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 A0A1W2PNR3 127 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 TRIM49D1C9J1S8 452 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 PDPK1O15530 556 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 TAC1P20366 129 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 HNF1AP20823 631 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 CFPP27918 469 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 ZNF83P51522 516 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 PRKAG1P54619 331 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 PRKAA2P54646 552 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 SELENBP1Q13228 472 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 SWI5Q1ZZU3 235 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 MST1LQ2TV78 715 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 CCNJQ5T5M9 372 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 FBXW9Q5XUX1 488 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 GALNT5Q7Z7M9 940 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 OR52N5Q8NH56 324 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 FBXO30Q8TB52 745 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 CIDECQ96AQ7 238 aaPredicted RBP12.64□□□□□ -0.39
HMGN1-208ENST00000443046 C1orf159Q96HA4 380 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 MUS81Q96NY9 551 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 CARD8Q9Y2G2 431 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 CCL27Q9Y4X3 112 aa12.64□□□□□ -0.39
HMGN1-208ENST00000443046 IGHV4-61A0A0C4DH41 118 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ESYT3A0FGR9 886 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ESPNB1AK53 854 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 NPIPB9F8W1W9 429 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 SPRY1O43609 319 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-208ENST00000443046 TCF21O43680 179 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 RAD51DO75771 328 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 RSL1D1O76021 490 aaKnown RBP12.63□□□□□ -0.39
HMGN1-208ENST00000443046 H6PDO95479 791 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ALOX5P09917 674 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 BMP4P12644 408 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ATP5F1P24539 256 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-208ENST00000443046 SLC7A1P30825 629 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 APOBEC3AP31941 199 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-208ENST00000443046 NTF4P34130 210 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 GPC1P35052 558 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 PDLIM4P50479 330 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 CHRNB3Q05901 458 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 GGTLC2Q14390 218 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 PDK3Q15120 406 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ZNF385BQ569K4 471 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 TEX35Q5T0J7 233 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ANKRD26P1Q6NSI1 321 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ZNF100Q8IYN0 542 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 DEPDC4Q8N2C3 294 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 COX18Q8N8Q8 333 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ATP6V1C2Q8NEY4 427 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 PHOSPHO1Q8TCT1 267 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 METTL2AQ96IZ6 378 aaKnown RBP12.63□□□□□ -0.39
HMGN1-208ENST00000443046 SOX7Q9BT81 388 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 BTBD2Q9BX70 525 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 GSTO2Q9H4Y5 243 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 DUSP22Q9NRW4 184 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 ACSS1Q9NUB1 689 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-208ENST00000443046 GIN1Q9NXP7 522 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 PMF1-BGLAPU3KQ54 211 aa12.63□□□□□ -0.39
HMGN1-208ENST00000443046 PDLIM1O00151 329 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 DNAJA2O60884 412 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 APEHP13798 732 aaKnown RBP12.62□□□□□ -0.39
HMGN1-208ENST00000443046 PRPH2P23942 346 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 POU6F2P78424 691 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-208ENST00000443046 CHRNEQ04844 493 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 PDE7AQ13946 482 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 GABRA6Q16445 453 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 CR1LQ2VPA4 569 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 ABLIM2Q6H8Q1 611 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 LRIG3Q6UXM1 1119 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 SLC22A9Q8IVM8 553 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 WDR31Q8NA23 367 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 OTUB1Q96FW1 271 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-208ENST00000443046 FOXN4Q96NZ1 517 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 STACQ99469 402 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 PIMREGQ9BSJ6 248 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 HOXD1Q9GZZ0 328 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 ADAM19Q9H013 955 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 ANKZF1Q9H8Y5 726 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 MALT1Q9UDY8 824 aa12.62□□□□□ -0.39
HMGN1-208ENST00000443046 LOC390937A0A1W2PQ73 354 aa12.61□□□□□ -0.39
HMGN1-208ENST00000443046 A0A1W2PR80 420 aa12.61□□□□□ -0.39
HMGN1-208ENST00000443046 ZNF716A6NP11 495 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms