RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 CHST2Q9Y4C5 530 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CACNA1EQ15878 2313 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 TRBV11-1A0A0K0K1C0 115 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 OR2W5A6NFC9 320 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 OR6C70A6NIJ9 312 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 TP53I11O14683 189 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 FOXD2O60548 495 aaPredicted RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 ENTPD6O75354 484 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 NDUFB2O95178 105 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 NUDT14O95848 222 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 JMJD7P0C870 316 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 GABRB1P18505 474 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CXCR1P25024 350 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 PEX19P40855 299 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 HTR3AP46098 478 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CAPZA2P47755 286 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 SLC26A5P58743 744 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 RNF4P78317 190 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ZNF91Q05481 1191 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 EIF3IQ13347 325 aaKnown RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 COL9A2Q14055 689 aaPredicted RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 SMN1Q16637 294 aaKnown RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 LAIR2Q6ISS4 152 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 RTL4Q6ZR62 310 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 OAFQ86UD1 273 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ANKRD13BQ86YJ7 626 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 NLGN4XQ8N0W4 816 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 SLC15A4Q8N697 577 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 IQCF1Q8N6M8 205 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 KBTBD8Q8NFY9 601 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 FAR1Q8WVX9 515 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 TTC9Q92623 222 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 SAMD8Q96LT4 415 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 TMEM43Q9BTV4 400 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 MND1Q9BWT6 205 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CDCA4Q9BXL8 241 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 DPH1Q9BZG8 443 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 FKBP14Q9NWM8 211 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 OCIAD1Q9NX40 245 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 TNRC6BQ9UPQ9 1833 aaKnown RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 CENPVL1A0A0U1RR11 272 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ENO4A6NNW6 628 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ALG1L2C9J202 215 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 KPNA4O00629 521 aaPredicted RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 HCRTR2O43614 444 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 PIP5K1CO60331 668 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CDC40O60508 579 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS50-205ENST00000441602 RFPL3O75679 317 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 IGF2P01344 180 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CLPSP04118 112 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 STSP08842 583 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ZNF3P17036 446 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 NOS3P29474 1203 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ACAA2P42765 397 aaKnown RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 CDH11P55287 796 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 PIGFQ07326 219 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CRYZQ08257 329 aaKnown RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 RAB40BQ12829 278 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CBFBQ13951 182 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 TIGD6Q17RP2 521 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 LANCL3Q6ZV70 420 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 MRGPREQ86SM8 312 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ZFAND2BQ8WV99 257 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 LRR1Q96L50 414 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 DEPDC7Q96QD5 511 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 PRSS27Q9BQR3 290 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ULBP3Q9BZM4 244 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 EGLN3Q9H6Z9 239 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 TIMMDC1Q9NPL8 285 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ENPP5Q9UJA9 477 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 ZNF223Q9UK11 482 aaPredicted RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 ICAM5Q9UMF0 924 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 PTRH2Q9Y3E5 179 aaKnown RBP5.54□□□□□ -1.52
VPS50-205ENST00000441602 ZNF337Q9Y3M9 751 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 NPFFR2Q9Y5X5 522 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 CCDC88CQ9P219 2028 aa5.54□□□□□ -1.52
VPS50-205ENST00000441602 A0A087WUJ7 227 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 PRR23D1E9PI22 279 aaPredicted RBP5.53□□□□□ -1.52
VPS50-205ENST00000441602 KLF4O43474 513 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 HYAL3O43820 417 aaPredicted RBP5.53□□□□□ -1.52
VPS50-205ENST00000441602 TSPAN2O60636 221 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 OR7A10O76100 309 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 PRR23D2P0DMB1 279 aaPredicted RBP5.53□□□□□ -1.52
VPS50-205ENST00000441602 MSX1P28360 303 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 RPL4P36578 427 aaKnown RBP5.53□□□□□ -1.52
VPS50-205ENST00000441602 MAP2K4P45985 399 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 PRPS1P60891 318 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 LSAMPQ13449 338 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 CCDC157Q569K6 752 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 C3orf38Q5JPI3 329 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 CLEC12AQ5QGZ9 265 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 RNLSQ5VYX0 342 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 TMEM205Q6UW68 189 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 KIRREL2Q6UWL6 708 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 SHISA6Q6ZSJ9 500 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 CXXC5Q7LFL8 322 aaKnown RBP5.53□□□□□ -1.52
VPS50-205ENST00000441602 TMPRSS9Q7Z410 1059 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 CCDC103Q8IW40 242 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 NAXDQ8IW45 347 aa5.53□□□□□ -1.52
VPS50-205ENST00000441602 C9orf40Q8IXQ3 194 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms