RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ING3Q9NXR8 418 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 MRPS33Q9Y291 106 aaKnown RBP13.12□□□□□ -0.31
LIMD1-202ENST00000440097 ZNF443Q9Y2A4 671 aaPredicted RBP13.12□□□□□ -0.31
LIMD1-202ENST00000440097 DSPPQ9NZW4 1301 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 IGHV5-51A0A0C4DH38 117 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 LMO7DNF2Z398 122 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 SYT5O00445 386 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 TSC22D2O75157 780 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 STX11O75558 287 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 SCO1O75880 301 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 RNH1P13489 461 aaKnown RBP13.12□□□□□ -0.31
LIMD1-202ENST00000440097 PRKAR1BP31321 381 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 CXCL12P48061 93 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 ARL4DP49703 201 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 NXPH1P58417 271 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 ST3GAL3Q11203 375 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 ARHGAP11BQ3KRB8 267 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 ENTPD8Q5MY95 495 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 C22orf42Q6IC83 251 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 TYW3Q6IPR3 259 aaKnown RBP13.12□□□□□ -0.31
LIMD1-202ENST00000440097 HEPHL1Q6MZM0 1159 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 ZER1Q7Z7L7 766 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 GJD3Q8N144 294 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 OR52R1Q8NGF1 315 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 OR9Q1Q8NGQ5 310 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 TMEM80Q96HE8 168 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 NECAB3Q96P71 396 aaPredicted RBP13.12□□□□□ -0.31
LIMD1-202ENST00000440097 GTPBP2Q9BX10 602 aaKnown RBP13.12□□□□□ -0.31
LIMD1-202ENST00000440097 PDE7BQ9NP56 450 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 MCUBQ9NWR8 336 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 TVP23BQ9NYZ1 205 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 NTMQ9P121 344 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 LRIT1Q9P2V4 623 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 REV1Q9UBZ9 1251 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 PLOD3O60568 738 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 APEX1P27695 318 aaKnown RBP13.11□□□□□ -0.31
LIMD1-202ENST00000440097 TRHRP34981 398 aaPredicted RBP13.11□□□□□ -0.31
LIMD1-202ENST00000440097 PGDP52209 483 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 DDI2Q5TDH0 399 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 PHC2Q8IXK0 858 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.11□□□□□ -0.31
LIMD1-202ENST00000440097 OR4M2Q8NGB6 313 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 ANKRD9Q96BM1 317 aaPredicted RBP13.11□□□□□ -0.31
LIMD1-202ENST00000440097 MND1Q9BWT6 205 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 PRDM9Q9NQV7 894 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 SEMA4GQ9NTN9 838 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 FBXO34Q9NWN3 711 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 CNIH4Q9P003 139 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 NLKQ9UBE8 527 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 MALT1Q9UDY8 824 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 A0A087WUU8 490 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 CENPVL1A0A0U1RR11 272 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 LILRA5A6NI73 299 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 TRIM3O75382 744 aaPredicted RBP13.11□□□□□ -0.31
LIMD1-202ENST00000440097 IL1AP01583 271 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 ILKQ13418 452 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 KCNAB1Q14722 419 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 TRAM2Q15035 370 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 C14orf28Q4W4Y0 310 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 BCDIN3DQ7Z5W3 292 aaKnown RBP13.11□□□□□ -0.31
LIMD1-202ENST00000440097 TCEANCQ8N8B7 351 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 RIT1Q92963 219 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 CCDC120Q96HB5 630 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 GFM1Q96RP9 751 aaKnown RBP13.11□□□□□ -0.31
LIMD1-202ENST00000440097 RACGAP1Q9H0H5 632 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 CHRDQ9H2X0 955 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 NDOR1Q9UHB4 597 aa13.11□□□□□ -0.31
LIMD1-202ENST00000440097 SYNDIG1LA6NDD5 238 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 PEX12O00623 359 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 CLDN4O14493 209 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 BCAT2O15382 392 aaPredicted RBP13.1□□□□□ -0.31
LIMD1-202ENST00000440097 IFNA16P05015 189 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 SOX18P35713 384 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 IFNGR2P38484 337 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 AFF3P51826 1226 aaKnown RBP13.1□□□□□ -0.31
LIMD1-202ENST00000440097 TRIQKQ629K1 86 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 DGAT2L6Q6ZPD8 337 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 NANOGP1Q8N7R0 232 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 C19orf18Q8NEA5 215 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 ZDHHC12Q96GR4 267 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIMD1-202ENST00000440097 PCED1AQ9H1Q7 454 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 PLCL2Q9UPR0 1127 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 SIT1Q9Y3P8 196 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 CHST2Q9Y4C5 530 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 ASXL3Q9C0F0 2248 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 GPR179Q6PRD1 2367 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 A0A087WV62 115 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 GKN3PP0CG01 181 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 SLC35E2P0CK97 266 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 SLC2A2P11168 524 aaPredicted RBP13.1□□□□□ -0.31
LIMD1-202ENST00000440097 MYF5P13349 255 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 SDC2P34741 201 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 EVI2BP34910 448 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 NNATQ16517 81 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 PRTGQ2VWP7 1150 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 FHL5Q5TD97 284 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 SLC36A4Q6YBV0 504 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 ZNF836Q6ZNA1 936 aa13.1□□□□□ -0.31
LIMD1-202ENST00000440097 GRAMD2AQ8IUY3 354 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms