RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 VNN3Q9NY84 501 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 PCDHGA7Q9Y5G6 932 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 AHCTF1Q8WYP5 2266 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 NSG1A0A0A6YYJ2 146 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 FBP1P09467 338 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 WASP42768 502 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CHRNEQ04844 493 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 ACSM1Q08AH1 577 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 APOFQ13790 326 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SLC46A3Q7Z3Q1 461 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 KLBQ86Z14 1044 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 OR5M3Q8NGP4 307 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 HMCESQ96FZ2 354 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SUSD3Q96L08 255 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 ZNF107Q9UII5 783 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 RNASE12Q5GAN4 147 aaKnown RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 B3GNTL1Q67FW5 361 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 FBXO15Q8NCQ5 510 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 BRI3BPQ8WY22 251 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SCN11AQ9UI33 1791 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 C4orf47A7E2U8 309 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 TFAP2AP05549 437 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 TACR1P25103 407 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 NFATC2Q13469 925 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 DOC2AQ14183 400 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 EMC4Q5J8M3 183 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 ZBTB37Q5TC79 503 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 WDR73Q6P4I2 378 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 PRSS58Q8IYP2 241 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 FAM58AQ8N1B3 248 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 SIDT2Q8NBJ9 832 aaKnown RBP6.77□□□□□ -1.32
VPS53-204ENST00000437048 TMEM125Q96AQ2 219 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 ZNF701Q9NV72 531 aaPredicted RBP6.77□□□□□ -1.32
VPS53-204ENST00000437048 TMLHEQ9NVH6 421 aa6.77□□□□□ -1.32
VPS53-204ENST00000437048 ADRA2CP18825 462 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 HOXC13P31276 330 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 HBA1P69905 142 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CHAF1BQ13112 559 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ATXN7L3Q14CW9 347 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 GUK1Q16774 197 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 IFNLR1Q8IU57 520 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 OR2L13Q8N349 312 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 OR5M8Q8NGP6 311 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 GABARAPL1Q9H0R8 117 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CLMPQ9H6B4 373 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CACNA1EQ15878 2313 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ANKRD34BA5PLL1 514 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TXNL1O43396 289 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CIDEAO60543 219 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ADH4P08319 380 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CPN1P15169 458 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 PTAFRP25105 342 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 NXNL2Q5VZ03 156 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CYB5R2Q6BCY4 276 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 APOBEC3HQ6NTF7 200 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 MDGA2Q7Z553 956 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 NPAS4Q8IUM7 802 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CDH26Q8IXH8 852 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TMEM130Q8N3G9 435 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CNIH3Q8TBE1 160 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 GCDHQ92947 438 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 INTS14Q96SY0 518 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TLR9Q9NR96 1032 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 MRPL22Q9NWU5 206 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 CADP27708 2225 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 INTS1Q8N201 2190 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 EMX1Q04741 257 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 PODNL1Q6PEZ8 512 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 GPR173Q9NS66 373 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 GMEB2Q9UKD1 530 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TISP43B9A030 160 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 NDUFS4O43181 175 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CNOT4O95628 575 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 CSTAP01040 98 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 HLA-DQB2P05538 268 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ECH1Q13011 328 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 AMZ1Q400G9 498 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CHADLQ6NUI6 762 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 GRAMD2AQ8IUY3 354 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TFGQ92734 400 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 SERINC2Q96SA4 455 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TM6SF2Q9BZW4 377 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CENPMQ9NSP4 180 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 DIMT1Q9UNQ2 313 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 TMEM218A2RU14 115 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 KLK3P07288 261 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 HIST1H3AP68431 136 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TIGD5Q53EQ6 642 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 EOGTQ5NDL2 527 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ZNF679Q8IYX0 411 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 BCL7CQ8WUZ0 217 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 PGAM5Q96HS1 289 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ACAD8Q9UKU7 415 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CACNA1DQ01668 2161 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TCRBV7S2A1N4TA0A589 114 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ATP1B1P05026 303 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 DSC2Q02487 901 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 PHYHD1Q5SRE7 291 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 OTOP3Q7RTS5 596 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CISD2Q8N5K1 135 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms