RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 OR2M5A3KFT3 312 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 CLEC18AA5D8T8 446 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 B2RBV5 119 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 SHISA8B8ZZ34 492 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 GTPBP1O00178 669 aaKnown RBP11.23□□□□□ -0.61
USP40-205ENST00000430158 FAAHO00519 579 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 CDC40O60508 579 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP40-205ENST00000430158 ESRRAP11474 423 aaPredicted RBP11.23□□□□□ -0.61
USP40-205ENST00000430158 IL7RP16871 459 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 PRKCAP17252 672 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 HK1P19367 917 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 IL11P20809 199 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 CALB2P22676 271 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 CHMP24386 653 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 AQP1P29972 269 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 LHX2P50458 406 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 ZNF136P52737 540 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 SRSF1Q07955 248 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP40-205ENST00000430158 EPS8Q12929 822 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 DUSP7Q16829 419 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 ZSWIM7Q19AV6 140 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 ZNF311Q5JNZ3 666 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 CLEC18BQ6UXF7 455 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 RINLQ6ZS11 566 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 PATL1Q86TB9 770 aaKnown RBP11.23□□□□□ -0.61
USP40-205ENST00000430158 DOLPP1Q86YN1 238 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 CLEC18CQ8NCF0 446 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 OR2T12Q8NG77 320 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 OR5M1Q8NGP8 315 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 OR14L1PQ8NHC6 308 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 FAM57AQ8TBR7 257 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 SLC35B4Q969S0 331 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 SLC7A6OSQ96CW6 309 aaPredicted RBP11.23□□□□□ -0.61
USP40-205ENST00000430158 WDYHV1Q96HA8 205 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 PTGES2Q9H7Z7 377 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 SPAG4Q9NPE6 437 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 TAS2R1Q9NYW7 299 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 TNFRSF10DQ9UBN6 386 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 RPH3AQ9Y2J0 694 aaPredicted RBP11.23□□□□□ -0.61
USP40-205ENST00000430158 ZNF337Q9Y3M9 751 aa11.23□□□□□ -0.61
USP40-205ENST00000430158 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ELOVL7A1L3X0 281 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 AP3D1O14617 1153 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 GMFGO60234 142 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 TPST2O60704 377 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 SLC19A2O60779 497 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ACTL6AO96019 429 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 PRG2P13727 222 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 HSD17B1P14061 328 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 CPN1P15169 458 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ZNF17P17021 662 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 PTGS2P35354 604 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 KCNJ5P48544 419 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 STARP49675 285 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 MNAT1P51948 309 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 CLDN18P56856 261 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 SESN3P58005 492 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 CEACAM7Q14002 265 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 LARS2Q15031 903 aaKnown RBP11.22□□□□□ -0.61
USP40-205ENST00000430158 QPRTQ15274 297 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 C3AR1Q16581 482 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 EIF2S3LQ2VIR3 472 aaKnown RBP11.22□□□□□ -0.61
USP40-205ENST00000430158 GXYLT1Q4G148 440 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 RTL6Q6ICC9 239 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 IFNEQ86WN2 208 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 DEFB107AQ8IZN7 70 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ABTB1Q969K4 478 aaPredicted RBP11.22□□□□□ -0.61
USP40-205ENST00000430158 RELTQ969Z4 430 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ZBTB8AQ96BR9 441 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ZNF607Q96SK3 696 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 CDRT15Q96T59 188 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 PRDM14Q9GZV8 571 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 C1orf21Q9H246 121 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ALG2Q9H553 416 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 LDAHQ9H6V9 325 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ACER3Q9NUN7 267 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 DKKL1Q9UK85 242 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 PRDM4Q9UKN5 801 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 PACSIN3Q9UKS6 424 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 ZNF232Q9UNY5 417 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 VDAC3Q9Y277 283 aa11.22□□□□□ -0.61
USP40-205ENST00000430158 NPIPA2E9PIF3 369 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 NPIPA3F8WFD2 350 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 J3QKU1 62 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 SYT5O00445 386 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 BCKDKO14874 412 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 FRS3O43559 492 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 SERPINB7O75635 380 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 LGI1O95970 557 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 OPN1SWP03999 348 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 C8BP07358 591 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 GKN3PP0CG01 181 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 ZNF708P17019 499 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 TCEA1P23193 301 aaKnown RBP11.21□□□□□ -0.61
USP40-205ENST00000430158 ADH6P28332 368 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 HTR1EP28566 365 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 KDELR2P33947 212 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 CA7P43166 264 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 FOXF1Q12946 379 aa11.21□□□□□ -0.61
USP40-205ENST00000430158 BNIP1Q12981 228 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms