RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TMEM5Q9Y2B1 443 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 BAHCC1Q9P281 2608 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 TRBV23OR9-2A0A075B6M9 112 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 B4DGG1 531 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 GALR3O60755 368 aaPredicted RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 COQ9O75208 318 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 NID1P14543 1247 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 RBMS1P29558 406 aaKnown RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 MAP3K8P41279 467 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 ZNF136P52737 540 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 CDH11P55287 796 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 RAB38P57729 211 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 CXADRP78310 365 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 ACSM1Q08AH1 577 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 DNASE1L3Q13609 305 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 DSG2Q14126 1118 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 ZSWIM7Q19AV6 140 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 DCST2Q5T1A1 773 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 ARMC4Q5T2S8 1044 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 AADACL4Q5VUY2 407 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 BCDIN3DQ7Z5W3 292 aaKnown RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 OOSP2Q86WS3 158 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 SNX29P2Q8IUI4 249 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 GID4Q8IVV7 300 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 NKAIN4Q8IVV8 208 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 NRMQ8IXM6 262 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 CSNK1A1LQ8N752 337 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 COX18Q8N8Q8 333 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 Q8N9G6 341 aaPredicted RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 POC5Q8NA72 575 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 OR2T33Q8NG76 320 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 KCNE4Q8WWG9 221 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 HOXB13Q92826 284 aaPredicted RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 GFM1Q96RP9 751 aaKnown RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 CNIH4Q9P003 139 aa13.69□□□□□ -0.22
USP4-203ENST00000415188 EXOGQ9Y2C4 368 aaKnown RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 ARHGEF17Q96PE2 2063 aaPredicted RBP13.69□□□□□ -0.22
USP4-203ENST00000415188 LOC105369274A0A096LPK9 316 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 LOC102723532A0A0G2JNH3 316 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 BLACEA4D250 179 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 D6RAR5 112 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 CYR61O00622 381 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 CHST10O43529 356 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 APOA1P02647 267 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 PRB1P04280 392 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 HTR1FP30939 366 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 GABRA5P31644 462 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 RPS19P39019 145 aaKnown RBP13.68□□□□□ -0.22
USP4-203ENST00000415188 LSM11P83369 360 aaKnown RBP eCLIP13.68□□□□□ -0.22
USP4-203ENST00000415188 LIPKQ5VXJ0 399 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 NXNL2Q5VZ03 156 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 OGFOD3Q6PK18 319 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 IGF2-ASQ6U949 168 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 OR4N4Q8N0Y3 316 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 CADM3Q8N126 398 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 CA13Q8N1Q1 262 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 SLC43A2Q8N370 569 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 ZBTB8BQ8NAP8 495 aaPredicted RBP13.68□□□□□ -0.22
USP4-203ENST00000415188 AVL9Q8NBF6 648 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 PSD4Q8NDX1 1056 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 OR4Q3Q8NH05 313 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 OR52N1Q8NH53 320 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 SLC25A46Q96AG3 418 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 TMCO6Q96DC7 493 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 UBL7Q96S82 380 aaPredicted RBP13.68□□□□□ -0.22
USP4-203ENST00000415188 LRRN3Q9H3W5 708 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 FN3KQ9H479 309 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 TXNL4BQ9NX01 149 aaKnown RBP13.68□□□□□ -0.22
USP4-203ENST00000415188 MAT2BQ9NZL9 334 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 GSTK1Q9Y2Q3 226 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 SPIN1Q9Y657 262 aaPredicted RBP13.68□□□□□ -0.22
USP4-203ENST00000415188 RNF215Q9Y6U7 377 aa13.68□□□□□ -0.22
USP4-203ENST00000415188 CCDC187A0A096LP49 1063 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 UNC119BA6NIH7 251 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 AGRPO00253 132 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 KLK10O43240 276 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 TNFSF15O95150 251 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 IGHA1P01876 353 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 THY1P04216 161 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 IMPDH2P12268 514 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 NT5EP21589 574 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 FGF9P31371 208 aaPredicted RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 SOX18P35713 384 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 SLC9A3P48764 834 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 SKP1P63208 163 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 POU6F2P78424 691 aaPredicted RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 PRICKLE4Q2TBC4 344 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 C14orf28Q4W4Y0 310 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 ARMC6Q6NXE6 501 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 PAQR6Q6TCH4 344 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 HSDL2Q6YN16 418 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 QSOX2Q6ZRP7 698 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 OR4N5Q8IXE1 308 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 CHAC2Q8WUX2 184 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 SLC35B4Q969S0 331 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 CTHRC1Q96CG8 243 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 HS6ST2Q96MM7 605 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 KCTD7Q96MP8 289 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 FAM210AQ96ND0 272 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 ZNF559Q9BR84 538 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms