RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 KLF11O14901 512 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 CXCL13O43927 109 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 PRKD3O94806 890 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 NTN1O95631 604 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 IDO1P14902 403 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 PRKCAP17252 672 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 PGCP20142 388 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 CRYGSP22914 178 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 WDR4P57081 412 aaKnown RBP13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 RAC3P60763 192 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 SELENBP1Q13228 472 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 GPR68Q15743 365 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 FAM174BQ3ZCQ3 159 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 SAXO2Q658L1 398 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 ANKRD42Q8N9B4 389 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 OR5D16Q8NGK9 328 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 FBXO27Q8NI29 283 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 NUDT8Q8WV74 236 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 XAGE5Q8WWM1 108 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 OPN3Q9H1Y3 402 aaPredicted RBP13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 OR51I1Q9H343 314 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 AIG1Q9NVV5 245 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 GPR52Q9Y2T5 361 aa13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 NUP214P35658 2090 aaPredicted RBP13.01□□□□□ -0.33
NIF3L1-205ENST00000409588 SDHDO14521 159 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 FCMRO60667 390 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 UGT2B17O75795 530 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 CPSF4O95639 269 aaKnown RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 CSTAP01040 98 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 PGRP06401 933 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 CHI3L1P36222 383 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 APOBEC1P41238 236 aaKnown RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 CLK1P49759 484 aaKnown RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 KHKP50053 298 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 MAP2K6P52564 334 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 RIPPLY3P57055 190 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 MAGOHP61326 146 aaKnown RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 SIRPAP78324 504 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 PHC1P78364 1004 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 GSTA3Q16772 222 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 TMEM176BQ3YBM2 270 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 SPANXN4Q5MJ08 99 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 TMEM201Q5SNT2 666 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 BEND6Q5SZJ8 279 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 PDZK1Q5T2W1 519 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 CMIPQ8IY22 773 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 ZNF614Q8N883 585 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 PIWIL2Q8TC59 973 aaKnown RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 SLC25A43Q8WUT9 341 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 ROPN1LQ96C74 230 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 TRNT1Q96Q11 434 aaKnown RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 OR52E6Q96RD3 313 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 PANX1Q96RD7 426 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 MTHFD2LQ9H903 347 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 TMBIM4Q9HC24 238 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 BEX4Q9NWD9 120 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 MARCOQ9UEW3 520 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 MKLN1Q9UL63 735 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 WDR45Q9Y484 360 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 GPR45Q9Y5Y3 372 aa13□□□□□ -0.33
NIF3L1-205ENST00000409588 SPIN1Q9Y657 262 aaPredicted RBP13□□□□□ -0.33
NIF3L1-205ENST00000409588 F8P00451 2351 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 CCDC154A6NI56 674 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 EFNA2O43921 213 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 KRT75O95678 551 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 YES1P07947 543 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 OR12D1P0DN82 309 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 NID1P14543 1247 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 FOSL1P15407 271 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 FPR1P21462 350 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 SLC7A1P30825 629 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 SLC6A8P48029 635 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 RPS26P62854 115 aaKnown RBP12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 PPP2R2AP63151 447 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 KCNJ10P78508 379 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 HPCAP84074 193 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 FOXF1Q12946 379 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 SKP2Q13309 424 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 GNA13Q14344 377 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 QPRTQ15274 297 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 ZNF239Q16600 458 aaKnown RBP12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 DEFB113Q30KQ7 82 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 PPP4R4Q6NUP7 873 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 C3orf33Q6P1S2 294 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 SSX8Q7RTT4 187 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 ANKRD46Q86W74 232 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 TGIF2LYQ8IUE0 185 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 RNF128Q8TEB7 428 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 ZFP90Q8TF47 636 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 NRGNQ92686 78 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 PIGTQ969N2 578 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 TLCD1Q96CP7 247 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 MAELQ96JY0 434 aaKnown RBP12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 PIP5K1AQ99755 562 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 SLC35A5Q9BS91 424 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 THUMPD3Q9BV44 507 aaKnown RBP12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 LIME1Q9H400 295 aa12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 SERHL2Q9H4I8 314 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms