RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 HCFC2Q9Y5Z7 792 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 TRAV27A0A087WT01 109 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 A0A1W2PP55 124 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 LRIT2A6NDA9 550 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ANTXRLA6NF34 631 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 C1QBP02746 253 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 SLC6A11P48066 632 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 PRLHRP49683 370 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 DHCR24Q15392 516 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 AVPI1Q5T686 147 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 NANOGP1Q8N7R0 232 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF527Q8NB42 609 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 OR52E4Q8NGH9 312 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 GNPDA2Q8TDQ7 276 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ST7LQ8TDW4 575 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 OSTF1Q92882 214 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 TM4SF18Q96CE8 201 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 AHCYL2Q96HN2 611 aaKnown RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 CAMK1GQ96NX5 476 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ALG8Q9BVK2 526 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 SRRQ9GZT4 340 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 GLIPR2Q9H4G4 154 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 DNMT3BQ9UBC3 853 aaKnown RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 NEUROG3Q9Y4Z2 214 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 A0A087WUU8 490 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 HEPACAM2A8MVW5 462 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 PRICKLE3O43900 615 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-206ENST00000405805 RAD1O60671 282 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 PCSK2P16519 638 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 SLC1A3P43003 542 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 CCR6P51684 374 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 KIAA1324Q6UXG2 1013 aaKnown RBP11.15□□□□□ -0.62
HMGB1-206ENST00000405805 PRSS45Q7RTY3 260 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 RANBP3LQ86VV4 465 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-206ENST00000405805 AVL9Q8NBF6 648 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 PLA2G15Q8NCC3 412 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 CLRN3Q8NCR9 226 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 GCDHQ92947 438 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-206ENST00000405805 TRMT2BQ96GJ1 504 aaKnown RBP11.15□□□□□ -0.62
HMGB1-206ENST00000405805 CCDC74BQ96LY2 380 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 WFDC6Q9BQY6 131 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 GPR174Q9BXC1 333 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 CDCA4Q9BXL8 241 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 SLC25A18Q9H1K4 315 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 NDOR1Q9UHB4 597 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 NAALAD2Q9Y3Q0 740 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 INSL6Q9Y581 213 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 RTTNQ86VV8 2226 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 CABIN1Q9Y6J0 2220 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 BLOC1S5-TXNDC5H3BN57 136 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 IL1AP01583 271 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 FBXO45P0C2W1 286 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 SNRPBP14678 240 aaKnown RBP11.15□□□□□ -0.62
HMGB1-206ENST00000405805 HK1P19367 917 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 NDUFV2P19404 249 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 ADH7P40394 386 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 OR12D2P58182 307 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 NDUFA9Q16795 377 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 COL28A1Q2UY09 1125 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 ARMC6Q6NXE6 501 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 GDPGP1Q6ZNW5 385 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF761Q86XN6 746 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-206ENST00000405805 HIF3AQ9Y2N7 669 aa11.15□□□□□ -0.62
HMGB1-206ENST00000405805 FCMRO60667 390 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 GCM2O75603 506 aaPredicted RBP11.15□□□□□ -0.63
HMGB1-206ENST00000405805 HTR3BO95264 441 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 CTSAP10619 480 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 ACADMP11310 421 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 UGT2B7P16662 529 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 OMPP47874 163 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 HCCSP53701 268 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 AKR1C8PQ5T2L2 129 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 FAM83HQ6ZRV2 1179 aaPredicted RBP11.15□□□□□ -0.63
HMGB1-206ENST00000405805 NLRC3Q7RTR2 1065 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 OOSP2Q86WS3 158 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 LINC00518Q8N0U6 118 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 INO80EQ8NBZ0 244 aaPredicted RBP11.15□□□□□ -0.63
HMGB1-206ENST00000405805 GPR32P1Q8NGA4 272 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 OR8S1Q8NH09 359 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 CREB3L4Q8TEY5 395 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 C10orf90Q96M02 699 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 SUCNR1Q9BXA5 334 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 RNF32Q9H0A6 362 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 MRTO4Q9UKD2 239 aaKnown RBP11.15□□□□□ -0.63
HMGB1-206ENST00000405805 PLEKHM1Q9Y4G2 1056 aa11.15□□□□□ -0.63
HMGB1-206ENST00000405805 C1orf226A1L170 272 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ANKRD61A6NGH8 418 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 HMGN4O00479 90 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 FFAR1O14842 300 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 CLUP10909 449 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ARF3P61204 181 aaPredicted RBP11.14□□□□□ -0.63
HMGB1-206ENST00000405805 POLR2GP62487 172 aaKnown RBP eCLIP11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ARF1P84077 181 aaKnown RBP11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ALG11Q2TAA5 492 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 GXYLT1Q4G148 440 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 OAFQ86UD1 273 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SLC44A3Q8N4M1 653 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ACOT4Q8N9L9 421 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 TMEM255BQ8WV15 326 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SLC25A46Q96AG3 418 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms