RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NKX3-1Q99801 234 aaPredicted RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 MARK1Q9P0L2 795 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 CES1P1Q9UKY3 287 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 CASC3O15234 703 aaKnown RBP19.45■□□□□ 0.7
CTCF-202ENST00000401394 SLC35G4P0C7Q5 338 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 SAGP10523 405 aaPredicted RBP19.45■□□□□ 0.7
CTCF-202ENST00000401394 ZNF136P52737 540 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 PRDX1Q06830 199 aaKnown RBP19.45■□□□□ 0.7
CTCF-202ENST00000401394 METRNLQ641Q3 311 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 ZCCHC10Q8TBK6 192 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 LINC00615Q96LM1 132 aaPredicted RBP19.45■□□□□ 0.7
CTCF-202ENST00000401394 OR14A2Q96R54 314 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 SEMA4CQ9C0C4 833 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 SPRTNQ9H040 489 aaPredicted RBP19.45■□□□□ 0.7
CTCF-202ENST00000401394 PELI2Q9HAT8 420 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 C17orf113A0A1B0GUU1 675 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 TBX19O60806 448 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 PPP1R3DO95685 299 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 F3P13726 295 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 STAT5AP42229 794 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 VEGFCP49767 419 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 BTG1P62324 171 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 RPS15P62841 145 aaKnown RBP19.45■□□□□ 0.7
CTCF-202ENST00000401394 CDK3Q00526 305 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 PUDPQ08623 228 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 SFRP5Q5T4F7 317 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 HES5Q5TA89 166 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 CDH24Q86UP0 819 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 CA10Q9NS85 328 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 KLK11Q9UBX7 282 aa19.45■□□□□ 0.7
CTCF-202ENST00000401394 ZNF443Q9Y2A4 671 aaPredicted RBP19.45■□□□□ 0.7
CTCF-202ENST00000401394 IRGMA1A4Y4 181 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 FAM171A2A8MVW0 826 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 SERPINI2O75830 405 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 PCDH8O95206 1070 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 CEBPBP17676 345 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 ATF4P18848 351 aaPredicted RBP19.44■□□□□ 0.7
CTCF-202ENST00000401394 CSNK2A2P19784 350 aaPredicted RBP19.44■□□□□ 0.7
CTCF-202ENST00000401394 P2RY2P41231 377 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 SUZ12Q15022 739 aaKnown RBP19.44■□□□□ 0.7
CTCF-202ENST00000401394 AANATQ16613 207 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 ZNF614Q8N883 585 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 GALNT11Q8NCW6 608 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 TTC9Q92623 222 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 UBL7Q96S82 380 aaPredicted RBP19.44■□□□□ 0.7
CTCF-202ENST00000401394 C1QTNF7Q9BXJ2 289 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 KCNN2Q9H2S1 579 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 SERGEFQ9UGK8 458 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 BHLHE40O14503 412 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 H2AFB2P0C5Z0 115 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 CSF2RAP15509 400 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 FOXK2Q01167 660 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 GNA13Q14344 377 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 DECR1Q16698 335 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 NLRC3Q7RTR2 1065 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 ANKRD33Q7Z3H0 272 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 ZAR1Q86SH2 424 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 MS4A15Q8N5U1 240 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 ADAP2Q9NPF8 381 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 TRIM36Q9NQ86 728 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 CLDND1Q9NY35 253 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 RCE1Q9Y256 329 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 WDR45Q9Y484 360 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 CFAP54Q96N23 3096 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 LINC00862A6NCI5 91 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 TRABD2BA6NFA1 517 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 B8ZZF3 427 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 NAT1P18440 290 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 RBMS1P29558 406 aaKnown RBP19.44■□□□□ 0.7
CTCF-202ENST00000401394 UBE2MP61081 183 aaKnown RBP19.44■□□□□ 0.7
CTCF-202ENST00000401394 SNTB2Q13425 540 aaKnown RBP19.44■□□□□ 0.7
CTCF-202ENST00000401394 SLC48A1Q6P1K1 146 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 FAM198BQ6UWH4 519 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 IDO2Q6ZQW0 420 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 GPR34Q9UPC5 381 aa19.44■□□□□ 0.7
CTCF-202ENST00000401394 UNC119BA6NIH7 251 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 LGALS8O00214 317 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 EMC8O43402 210 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 ADAM11O75078 769 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 ERGP11308 486 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 PEBP1P30086 187 aaKnown RBP19.43■□□□□ 0.7
CTCF-202ENST00000401394 KRT33BQ14525 404 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 MFSD13AQ14CX5 517 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 GRK1Q15835 563 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 OTPQ5XKR4 325 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 GPR139Q6DWJ6 353 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 LINC00471Q8N535 108 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 LGALS14Q8TCE9 139 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 ZNF681Q96N22 645 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 SPATA2Q9UM82 520 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 DRD2P14416 443 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 EPCAMP16422 314 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 RAB3BP20337 219 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 GALEQ14376 348 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 MELKQ14680 651 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 FAAH2Q6GMR7 532 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 SMPDL3BQ92485 455 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 PTCHD1Q96NR3 888 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 NT5DC2Q9H857 520 aa19.43■□□□□ 0.7
CTCF-202ENST00000401394 IL21RQ9HBE5 538 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 127.3 ms