RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 A0A0G2JNJ9 132 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 CLCA1A8K7I4 914 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 C5orf58C9J3I9 102 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 SNX3O60493 162 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 BCAS1O75363 584 aaPredicted RBP19.58■□□□□ 0.72
CLN3-207ENST00000395653 NTN1O95631 604 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 NPPAP01160 153 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 THBS1P07996 1170 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 GP1BBP13224 206 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 CEACAM8P31997 349 aaPredicted RBP19.58■□□□□ 0.72
CLN3-207ENST00000395653 SUCLG1P53597 346 aaKnown RBP19.58■□□□□ 0.72
CLN3-207ENST00000395653 CLDN15P56746 228 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 CLDN20P56880 219 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 RAC1P63000 192 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 QPRTQ15274 297 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 CDSNQ15517 529 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 LIN52Q52LA3 116 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 REP15Q6BDI9 236 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 GGNQ86UU5 652 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 FBXO27Q8NI29 283 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 ST8SIA1Q92185 356 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 CACYBPQ9HB71 228 aaKnown RBP19.58■□□□□ 0.72
CLN3-207ENST00000395653 DNAJB12Q9NXW2 375 aaKnown RBP19.58■□□□□ 0.72
CLN3-207ENST00000395653 Q9UFV3 132 aa19.58■□□□□ 0.72
CLN3-207ENST00000395653 ARHGAP21Q5T5U3 1957 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 HSPB2A8KAH6 182 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 SEC14L5O43304 696 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 TOXO94900 526 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 ME2P23368 584 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 SLC6A8P48029 635 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 MTPNP58546 118 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 RPS3AP61247 264 aaKnown RBP19.57■□□□□ 0.72
CLN3-207ENST00000395653 CDK6Q00534 326 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 CYLC2Q14093 348 aaPredicted RBP19.57■□□□□ 0.72
CLN3-207ENST00000395653 HSPB2Q16082 182 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 ZSWIM7Q19AV6 140 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 MRPL2Q5T653 305 aaKnown RBP19.57■□□□□ 0.72
CLN3-207ENST00000395653 CHMP1BQ7LBR1 199 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 CCDC71Q8IV32 467 aaPredicted RBP19.57■□□□□ 0.72
CLN3-207ENST00000395653 TMEM234Q8WY98 164 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 SMPDL3BQ92485 455 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 CNOT9Q92600 299 aaKnown RBP19.57■□□□□ 0.72
CLN3-207ENST00000395653 CLCF1Q9UBD9 225 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 IFT52Q9Y366 437 aa19.57■□□□□ 0.72
CLN3-207ENST00000395653 LOC100653049A0A140TA62 436 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 H0YC42 278 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 MRASO14807 208 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 KRT34O76011 436 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 PGM3O95394 542 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 IL2RAP01589 272 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 ETS2P15036 469 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 TPD52P55327 224 aaPredicted RBP19.56■□□□□ 0.72
CLN3-207ENST00000395653 DLX5P56178 289 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 CAPRIN1Q14444 709 aaKnown RBP19.56■□□□□ 0.72
CLN3-207ENST00000395653 LARS2Q15031 903 aaKnown RBP19.56■□□□□ 0.72
CLN3-207ENST00000395653 RNF220Q5VTB9 566 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 REEP3Q6NUK4 255 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 ZNF836Q6ZNA1 936 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 MTDHQ86UE4 582 aaKnown RBP19.56■□□□□ 0.72
CLN3-207ENST00000395653 VRK2Q86Y07 508 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 PCYOX1LQ8NBM8 494 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 TNIP2Q8NFZ5 429 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 LILRB4Q8NHJ6 448 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 NFKBIDQ8NI38 313 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 RP9Q8TA86 221 aaKnown RBP19.56■□□□□ 0.72
CLN3-207ENST00000395653 WNT2BQ93097 391 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 ZNF524Q96C55 264 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 TM9SF2Q99805 663 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 CCDC106Q9BWC9 280 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 KAT8Q9H7Z6 458 aaKnown RBP19.56■□□□□ 0.72
CLN3-207ENST00000395653 ZNF232Q9UNY5 417 aa19.56■□□□□ 0.72
CLN3-207ENST00000395653 ZNF443Q9Y2A4 671 aaPredicted RBP19.56■□□□□ 0.72
CLN3-207ENST00000395653 CDHR4A6H8M9 788 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 FXYD1O00168 92 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 EEF1A1P68104 462 aaKnown RBP19.55■□□□□ 0.72
CLN3-207ENST00000395653 RBBP4Q09028 425 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 SCARB2Q14108 478 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 SELPLGQ14242 412 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 ADRM1Q16186 407 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 GRAMD2AQ8IUY3 354 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 ZNF440Q8IYI8 595 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 NAXEQ8NCW5 288 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 LRRC58Q96CX6 371 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 ZFP3Q96NJ6 502 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 SH3GL1Q99961 368 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 TRIM8Q9BZR9 551 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 ACER3Q9NUN7 267 aa19.55■□□□□ 0.72
CLN3-207ENST00000395653 PRSS44E7EML9 344 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 FAAHO00519 579 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 EIF1AYO14602 144 aaKnown RBP19.54■□□□□ 0.72
CLN3-207ENST00000395653 PABPC4LP0CB38 370 aaKnown RBP19.54■□□□□ 0.72
CLN3-207ENST00000395653 IL11P20809 199 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 SLC6A2P23975 617 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 HTR1EP28566 365 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 RYKP34925 604 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 SESN3P58005 492 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 SELENBP1Q13228 472 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 CYP51A1Q16850 503 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 CTU2Q2VPK5 515 aaKnown RBP19.54■□□□□ 0.72
CLN3-207ENST00000395653 NANOGP8Q6NSW7 305 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms