RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 BICRALQ6AI39 1079 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 DPP10Q8N608 796 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 AQP11Q8NBQ7 271 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 OR10H5Q8NGA6 315 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 OR10G2Q8NGC3 310 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 OR9Q1Q8NGQ5 310 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ADAMTS18Q8TE60 1221 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 RASSF5Q8WWW0 418 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 MESP1Q9BRJ9 268 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 NXT1Q9UKK6 140 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 LOC100506127A0A0U1RQW1 187 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SHISA8B8ZZ34 492 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 NPIPA2E9PIF3 369 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 NPIPA3F8WFD2 350 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 MKRN2OSH3BPM6 223 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 HOXB6P17509 224 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 MAP4K2Q12851 820 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 IL11RAQ14626 422 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ELAVL1Q15717 326 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 STK11Q15831 433 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 TMEM176BQ3YBM2 270 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 OPN5Q6U736 354 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 AHSA2Q719I0 299 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 VASH1Q7L8A9 365 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 JAZF1Q86VZ6 243 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 OR8H2Q8N162 312 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SLC38A5Q8WUX1 472 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 TRIM63Q969Q1 353 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 DDX31Q9H8H2 851 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 GORASP2Q9H8Y8 452 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 CNIH4Q9P003 139 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 CAMK2AQ9UQM7 478 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PCDHGA10Q9Y5H3 936 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 RNASET2O00584 256 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF45Q02386 682 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 STEAP3Q658P3 488 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ANKRD34AQ69YU3 496 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF425Q6IV72 752 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PRSS48Q7RTY5 328 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 FAM86B1Q8N7N1 296 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ASCC1Q8N9N2 400 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SYT14Q8NB59 555 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PRSS33Q8NF86 280 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 OR14A16Q8NHC5 309 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 GEMIN6Q8WXD5 167 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 RPL3LQ92901 407 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 YIPF6Q96EC8 236 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PYURFQ96I23 114 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SPOCK3Q9BQ16 436 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 WDR77Q9BQA1 342 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 TMEM45AQ9NWC5 275 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 FOXJ2Q9P0K8 574 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 BTNL2Q9UIR0 455 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 LIPT1Q9Y234 373 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 MED31Q9Y3C7 131 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 TICRRQ7Z2Z1 1910 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 CIB4A0PJX0 185 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 J3KTA2 159 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ADAMDEC1O15204 470 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ICAM2P13598 275 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SOX6P35712 828 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 AGFG1P52594 562 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 AGERQ15109 404 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SYT6Q5T7P8 510 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 EEF1A1P5Q5VTE0 462 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 USP43Q70EL4 1123 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 TMEM52Q8NDY8 209 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 TM9SF4Q92544 642 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 POP5Q969H6 163 aaKnown RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 LCORQ96JN0 433 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF300Q96RE9 604 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PITHD1Q9GZP4 211 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PRMT8Q9NR22 394 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SH3D21A4FU49 640 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 AGAP5A6NIR3 686 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 VSTM2BA6NLU5 285 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SLC16A6O15403 523 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 KLK8O60259 260 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 MITFO75030 526 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 KCNK5O95279 499 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 GIMD1P0DJR0 217 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 HOXC12P31275 282 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 KCNJ10P78508 379 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 MRPL2Q5T653 305 aaKnown RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF574Q6ZN55 896 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 OAFQ86UD1 273 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 MAML2Q8IZL2 1156 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SHISA5Q8N114 240 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF321PQ8N8H1 164 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SLC38A9Q8NBW4 561 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 FGF11Q92914 225 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 LMF1Q96S06 567 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 MENTQ9BUN1 341 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 NUDT9Q9BW91 350 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SRA1Q9HD15 236 aaKnown RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SLC52A3Q9NQ40 469 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 C14orf105Q9NVL8 296 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 THUMPD1Q9NXG2 353 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms