RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MSH4O15457 936 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 PGK1P00558 417 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 GLRA2P23416 452 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 ADORA2BP29275 332 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 RPL29P47914 159 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 STARP49675 285 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 PPT1P50897 306 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 GBX2P52951 348 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 UBE2HP62256 183 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 RPL32P62910 135 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 MRPS11P82912 194 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SPIBQ01892 262 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 RAB40BQ12829 278 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 LAGE3Q14657 143 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 WSCD1Q658N2 575 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 FAHD2BQ6P2I3 314 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 CASC1Q6TDU7 716 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 TMEM123Q8N131 208 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 ANKFN1Q8N957 763 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 TRMT10AQ8TBZ6 339 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 PELI1Q96FA3 418 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 FAHD2AQ96GK7 314 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 CITED1Q99966 193 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 DEFB126Q9BYW3 111 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 PPDPFQ9H3Y8 114 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 GLIPR2Q9H4G4 154 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SLC17A5Q9NRA2 495 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SPRR3Q9UBC9 169 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 RIMS3Q9UJD0 308 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 PTBP2Q9UKA9 531 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 C15orf38-AP3S2A0A0A6YYH1 394 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 KIF2AO00139 706 aaPredicted RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 BTN3A3O00478 584 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 OR7A17O14581 309 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 PRRG1O14668 218 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 HDAC3O15379 428 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 RIPK2O43353 540 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SNNO75324 88 aaPredicted RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SPAG6O75602 509 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 RHOBTB1O94844 696 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 LRATO95237 230 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 IGHDP01880 384 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CCDC166P0CW27 439 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 AP3M2P53677 418 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ACTR1AP61163 376 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 TP53I3Q53FA7 332 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ATL3Q6DD88 541 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 FAM71F2Q6NXP2 309 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 PMF1Q6P1K2 205 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 FAM199XQ6PEV8 388 aaPredicted RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF683Q8IZ20 524 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CADM2Q8N3J6 435 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CLDN19Q8N6F1 224 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 KIR3DL3Q8N743 410 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 FAM133AQ8N9E0 248 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SYT14Q8NB59 555 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 STEAP2Q8NFT2 490 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 FBXO30Q8TB52 745 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 RLN3Q8WXF3 142 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SLC25A38Q96DW6 304 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CELF6Q96J87 481 aaKnown RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 WRAP73Q9P2S5 460 aaPredicted RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 MAB21L2Q9Y586 359 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 LOC100131303A0A0U1RQF7 123 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 LRP5LA4QPB2 252 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 DHRS7CA6NNS2 312 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 NPIPA7E9PJI5 369 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 K7ENP7 123 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 MPHOSPH10O00566 681 aaKnown RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ARPC3O15145 178 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 TPST2O60704 377 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CABYRO75952 493 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 NPIPA8P0DM63 369 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CYP2B6P20813 491 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 VDAC1P21796 283 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 PCMT1P22061 227 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 LAP3P28838 519 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 EPHX2P34913 555 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 HSPA2P54652 639 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 RPS8P62241 208 aaKnown RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CSTF1Q05048 431 aaKnown RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CHIT1Q13231 466 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 GPM6BQ13491 265 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 MAJINQ3KP22 176 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 KHDRBS2Q5VWX1 349 aaKnown RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 OR5M10Q6IEU7 315 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 KDELC1Q6UW63 502 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SYT10Q6XYQ8 523 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 C16orf62Q7Z3J2 963 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF677Q86XU0 584 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 VSTM4Q8IW00 320 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CLEC4FQ8N1N0 589 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 MTURNQ8N3F0 131 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 GPR137CQ8N3F9 429 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 C15orf54Q8N8G6 183 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ATP6V0D2Q8N8Y2 350 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 OR10A7Q8NGE5 316 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 OR2A12Q8NGT7 310 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 OR1F12Q8NHA8 337 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SLC5A11Q8WWX8 675 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms