RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 AGAP7PQ5VUJ5 663 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 PRSS41Q7RTY9 318 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 RANBP3LQ86VV4 465 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 FAM83FQ8NEG4 500 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 DOK4Q8TEW6 326 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 TMEM255BQ8WV15 326 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CTRCQ99895 268 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 APMAPQ9HDC9 416 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 FGF20Q9NP95 211 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SOHLH2Q9NX45 425 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SEMA5BQ9P283 1151 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SLC7A7Q9UM01 511 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 KDM4EB2RXH2 506 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CTDSP2O14595 271 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CH25HO95992 272 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 THY1P04216 161 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 ATP1B1P05026 303 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 THBS1P07996 1170 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 TSPAN19P0C672 248 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 FOLR1P15328 257 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CPEP16870 476 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 RORCP51449 518 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 EEF1A1P68104 462 aaKnown RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 HSD11B2P80365 405 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 EIF3IQ13347 325 aaKnown RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 RTP5Q14D33 572 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SLC30A6Q6NXT4 461 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CCDC190Q86UF4 302 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CADM3Q8N126 398 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 RFKQ969G6 155 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SLC41A2Q96JW4 573 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SLC46A1Q96NT5 459 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SIAEQ9HAT2 523 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SMURF1Q9HCE7 757 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CPNE5Q9HCH3 593 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SNTG1Q9NSN8 517 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 PCDHGB6Q9Y5F9 930 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SPIN1Q9Y657 262 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 FRYQ5TBA9 3013 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 A0A0J9YY10 115 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 TMEM129A0AVI4 362 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 C1QTNF9BB2RNN3 333 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 LOC110117498-PIK3R3F6TDL0 507 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 FGF17O60258 216 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 PIP5K1CO60331 668 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 BRINP1O60477 761 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 STX11O75558 287 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 C1QTNF9P0C862 333 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 GAS1P54826 345 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 RUNX1T1Q06455 604 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 CDC20Q12834 499 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 DCST2Q5T1A1 773 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 FHL5Q5TD97 284 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 LAPTM4BQ86VI4 370 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 GALNT12Q8IXK2 581 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF619Q8N2I2 560 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 CSNK1A1LQ8N752 337 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 COX18Q8N8Q8 333 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 BMPERQ8N8U9 685 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 PIK3R3Q92569 461 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 TRMT61AQ96FX7 289 aaKnown RBP14.35□□□□□ -0.11
CCDC40-202ENST00000374876 OR6C1Q96RD1 312 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 SLC30A2Q9BRI3 323 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF350Q9GZX5 532 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 FAM60AQ9NP50 221 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 SLC39A1Q9NY26 324 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 IL20Q9NYY1 176 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 EXOSC1Q9Y3B2 195 aaKnown RBP14.35□□□□□ -0.11
CCDC40-202ENST00000374876 FREM2Q5SZK8 3169 aa14.35□□□□□ -0.11
CCDC40-202ENST00000374876 A0A087WV62 115 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 CENPVL1A0A0U1RR11 272 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 RGS5O15539 181 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 GPR75O95800 540 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 DBIP07108 87 aaKnown RBP14.34□□□□□ -0.11
CCDC40-202ENST00000374876 SOX18P35713 384 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 CDH11P55287 796 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 TMEM44Q2T9K0 475 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 MANEAQ5SRI9 462 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 OR2G6Q5TZ20 316 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 RNF44Q7L0R7 432 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 D2HGDHQ8N465 521 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 CDRT4Q8N9R6 151 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 OR5T3Q8NGG3 340 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 OR4Q3Q8NH05 313 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 GATAD2BQ8WXI9 593 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 HTRA1Q92743 480 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 SURF4O15260 269 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 KLF4O43474 513 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 HCRTR1O43613 425 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 PLOD3O60568 738 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 DLGAP3O95886 979 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 RBMS1P29558 406 aaKnown RBP14.34□□□□□ -0.11
CCDC40-202ENST00000374876 VSX2P58304 361 aaPredicted RBP14.34□□□□□ -0.11
CCDC40-202ENST00000374876 PGGHGQ32M88 737 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF620Q6ZNG0 422 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 SHFQ7M4L6 423 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 C19orf47Q8N9M1 422 aaKnown RBP14.34□□□□□ -0.11
CCDC40-202ENST00000374876 TMEM52Q8NDY8 209 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 OR2T33Q8NG76 320 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 GPR151Q8TDV0 419 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms