RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TEX101Q9BY14 249 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ARRDC1-AS1Q9H2J1 176 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF160Q9HCG1 818 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 RBMX2Q9Y388 322 aaKnown RBP13.89□□□□□ -0.19
COL17A1-201ENST00000353479 HEMK1Q9Y5R4 338 aaPredicted RBP13.89□□□□□ -0.19
COL17A1-201ENST00000353479 NUP205Q92621 2012 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 L7N2F9 121 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 OLFM2O95897 454 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 TACR3P29371 465 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 SOX3P41225 446 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 VAMP2P63027 116 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 NKX3-2P78367 333 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 MINDY2Q8NBR6 621 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 OR8H1Q8NGG4 311 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 MAELQ96JY0 434 aaKnown RBP13.88□□□□□ -0.19
COL17A1-201ENST00000353479 DDX31Q9H8H2 851 aaKnown RBP13.88□□□□□ -0.19
COL17A1-201ENST00000353479 SH2B3Q9UQQ2 575 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 EEF1E1O43324 174 aaKnown RBP13.88□□□□□ -0.19
COL17A1-201ENST00000353479 RRADP55042 308 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 WNT4P56705 351 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 LEXMQ3ZCV2 418 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 ATAD3CQ5T2N8 411 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 FUNDC1Q8IVP5 155 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 B3GNT7Q8NFL0 401 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 FAM71F1Q96KD3 344 aaPredicted RBP13.88□□□□□ -0.19
COL17A1-201ENST00000353479 WASH6PQ9NQA3 447 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 UBAP1Q9NZ09 502 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 EBF1Q9UH73 591 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 NOP16Q9Y3C1 178 aaKnown RBP13.88□□□□□ -0.19
COL17A1-201ENST00000353479 SUSD5O60279 629 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 GTF2F2P13984 249 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 CHRFAM7AQ494W8 412 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 OR13C2Q8NGS9 318 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 RFT1Q96AA3 541 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 NRSN2Q9GZP1 204 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 LHPPQ9H008 270 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 LYRM4Q9HD34 91 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 F5P12259 2224 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 WDPCPO95876 746 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 CSF2P04141 144 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 CD3GP09693 182 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 HTR4Q13639 388 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 XKR7Q5GH72 579 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM151AQ8N4L1 468 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 LSM14AQ8ND56 463 aaKnown RBP13.88□□□□□ -0.19
COL17A1-201ENST00000353479 PAPD5Q8NDF8 572 aaKnown RBP13.88□□□□□ -0.19
COL17A1-201ENST00000353479 INTS14Q96SY0 518 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 FN3KQ9H479 309 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 EGLN3Q9H6Z9 239 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 PLEK2Q9NYT0 353 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 KCND3Q9UK17 655 aa13.88□□□□□ -0.19
COL17A1-201ENST00000353479 LOC105369274A0A096LPK9 316 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 LOC102723532A0A0G2JNH3 316 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 EPHA5P54756 1037 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 NCS1P62166 190 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 DNASE1L3Q13609 305 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 NKAIN1Q4KMZ8 207 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF517Q6ZMY9 492 aaPredicted RBP13.87□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF584Q8IVC4 421 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 OR4N4Q8N0Y3 316 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 OLIG1Q8TAK6 271 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 ACOT12Q8WYK0 555 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 ANKRD10Q9NXR5 420 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 DAPP1Q9UN19 280 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF831Q5JPB2 1677 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 C13orf42A0A1B0GVH6 325 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 UCHL1P09936 223 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 PGGHGQ32M88 737 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 CYHR1Q6ZMK1 362 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 SLC16A11Q8NCK7 471 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 SENP5Q96HI0 755 aaPredicted RBP13.87□□□□□ -0.19
COL17A1-201ENST00000353479 FER1L6-AS2Q96M78 137 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 MUTYHQ9UIF7 546 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 SLC6A5Q9Y345 797 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 METTL12A8MUP2 240 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 MTRF1O75570 445 aaKnown RBP13.87□□□□□ -0.19
COL17A1-201ENST00000353479 RBBP9O75884 186 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 RAB3BP20337 219 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 TCTN1Q2MV58 587 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 FRMPD2BQ6IN97 320 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 MFSD12Q6NUT3 480 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 KCTD9Q7L273 389 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 BAHD1Q8TBE0 780 aaPredicted RBP13.87□□□□□ -0.19
COL17A1-201ENST00000353479 NPRL2Q8WTW4 380 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 CASTOR1Q8WTX7 329 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF775Q96BV0 537 aaPredicted RBP13.87□□□□□ -0.19
COL17A1-201ENST00000353479 ACOT13Q9NPJ3 140 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 KIAA1217Q5T5P2 1943 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 KRBA1A5PL33 1030 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 MBTPS2O43462 519 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 APLNRP35414 380 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 FXYD6P3P58550 94 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 RAB11BQ15907 218 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 OR51B6Q9H340 312 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 PPT2Q9UMR5 302 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 LCMT2O60294 686 aaKnown RBP13.87□□□□□ -0.19
COL17A1-201ENST00000353479 PLAG1Q6DJT9 500 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 OR5W2Q8NH69 310 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 SLAMF7Q9NQ25 335 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 RLIMQ9NVW2 624 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms